Inferring carbon sources from gene expression profiles using metabolic flux models.

by Aaron Brandes, Desmond S Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E Galagan
Published 2012-01-01

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models.

by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan
Published 2012-01-01

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.

by Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S Lun, Brian Weiner, Maha R Farhat, Tan-Yun Cheng, D Branch Moody, Megan Murray, James E Galagan
Published 2009-08-01

Comparative Genomics of Enterococci: Variation in <named-content content-type="genus-species">Enterococcus faecalis</named-content>, Clade Structure in <named-content content-type=...

by Kelli L. Palmer, Paul Godfrey, Allison Griggs, Veronica N. Kos, Jeremy Zucker, Christopher Desjardins, Gustavo Cerqueira, Dirk Gevers, Suzanne Walker, Jennifer Wortman, Michael Feldgarden, Brian Haas, Bruce Birren, Michael S. Gilmore
Published 2012-03-01

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

by Gregory C Kettler, Adam C Martiny, Katherine Huang, Jeremy Zucker, Maureen L Coleman, Sebastien Rodrigue, Feng Chen, Alla Lapidus, Steven Ferriera, Justin Johnson, Claudia Steglich, George M Church, Paul Richardson, Sallie W Chisholm
Published 2007-12-01

Metabolic reconstruction for metagenomic data and its application to the human microbiome.

by Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M Schubert, Jacques Izard, Brandi L Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T Kelley, Barbara Methé, Patrick D Schloss, Dirk Gevers, Makedonka Mitreva, Curtis Huttenhower
Published 2012-01-01

Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.

by Jason W Holder, Jil C Ulrich, Anthony C DeBono, Paul A Godfrey, Christopher A Desjardins, Jeremy Zucker, Qiandong Zeng, Alex L B Leach, Ion Ghiviriga, Christine Dancel, Thomas Abeel, Dirk Gevers, Chinnappa D Kodira, Brian Desany, Jason P Affourtit, Bruce W Birren, Anthony J Sinskey
Published 2011-09-01

Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass

by James Kirby, Gina M. Geiselman, Junko Yaegashi, Joonhoon Kim, Xun Zhuang, Mary Bao Tran-Gyamfi, Jan-Philip Prahl, Eric R. Sundstrom, Yuqian Gao, Nathalie Munoz, Kristin E. Burnum-Johnson, Veronica T. Benites, Edward E. K. Baidoo, Anna Fuhrmann, Katharina Seibel, Bobbie-Jo M. Webb-Robertson, Jeremy Zucker, Carrie D. Nicora, Deepti Tanjore, Jon K. Magnuson, Jeffrey M. Skerker, John M. Gladden
Published 2021-04-01

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.

by Christopher A Desjardins, Mia D Champion, Jason W Holder, Anna Muszewska, Jonathan Goldberg, Alexandre M Bailão, Marcelo Macedo Brigido, Márcia Eliana da Silva Ferreira, Ana Maria Garcia, Marcin Grynberg, Sharvari Gujja, David I Heiman, Matthew R Henn, Chinnappa D Kodira, Henry León-Narváez, Larissa V G Longo, Li-Jun Ma, Iran Malavazi, Alisson L Matsuo, Flavia V Morais, Maristela Pereira, Sabrina Rodríguez-Brito, Sharadha Sakthikumar, Silvia M Salem-Izacc, Sean M Sykes, Marcus Melo Teixeira, Milene C Vallejo, Maria Emília Machado Telles Walter, Chandri Yandava, Sarah Young, Qiandong Zeng, Jeremy Zucker, Maria Sueli Felipe, Gustavo H Goldman, Brian J Haas, Juan G McEwen, Gustavo Nino-Vega, Rosana Puccia, Gioconda San-Blas, Celia Maria de Almeida Soares, Bruce W Birren, Christina A Cuomo
Published 2011-10-01

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

by Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Devasahayam Arokia Balaya Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff-Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community
Published 2021-10-01

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

by Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, D A B Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff‐Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community
Published 2021-12-01

Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

by Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Published 2012

Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

by Colijn, Caroline, Brandes, Aaron, Zucker, Jeremy Daniel Hofeld, Lun, Desmond S., Weiner, Brian, Farhat, Maha Reda, Cheng, Tan-Yun, Moody, D Branch, Murray, Megan Blanche, Galagan, James E
Published 2012

Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

by Brandes, Aaron, Lun, Desmond S., Ip, Kuhn, Zucker, Jeremy Daniel Hofeld, Colijn, Caroline, Weiner, Brian, Galagan, James E.
Published 2013

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

by Abubucker, Sahar, Segata, Nicola, Goll, Johannes, Schubert, Alyxandria M., Izard, Jacques, Cantarel, Brandi L., Rodriguez-Mueller, Beltran, Zucker, Jeremy, Thiagarajan, Mathangi, Henrissat, Bernard, White, Owen, Kelley, Scott T., Methe, Barbara, Schloss, Patrick D., Gevers, Dirk, Mitreva, Makedonka, Huttenhower, Curtis
Published 2012

Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus

by Kettler, Gregory C, Martiny, Adam C, Coleman, Maureen L, Rodrigue, Sebastien, Lapidus, Alla, Ferriera, Steven, Steglich, Claudia, Chisholm, Sallie W, Huang, Katherine, Zucker, Jeremy Daniel Hofeld, Chen, Feng, Johnson, Justin, Church, George McDonald, Richardson, Paul
Published 2013

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

by Murray, Megan B., Moody, D. Branch, Cheng, Tan-Yun, Farhat, Maha R., Galagan, James E., Weiner, Brian, Lun, Desmond S., Brandes, Aaron, Colijn, Caroline, Zucker, Jeremy
Published 2010