Identification and Characterization of ten <i>Escherichia coli</i> Strains Encoding Novel Shiga Toxin 2 Subtypes, Stx2n as Well as Stx2j, Stx2m, and Stx2o, in the United States

by Rebecca L. Lindsey, Arjun Prasad, Michael Feldgarden, Narjol Gonzalez-Escalona, Curtis Kapsak, William Klimke, Angela Melton-Celsa, Peyton Smith, Alexandre Souvorov, Jenny Truong, Flemming Scheutz
Published 2023-10-01

Comparative Genomics of Enterococci: Variation in <named-content content-type="genus-species">Enterococcus faecalis</named-content>, Clade Structure in <named-content content-type=...

by Kelli L. Palmer, Paul Godfrey, Allison Griggs, Veronica N. Kos, Jeremy Zucker, Christopher Desjardins, Gustavo Cerqueira, Dirk Gevers, Suzanne Walker, Jennifer Wortman, Michael Feldgarden, Brian Haas, Bruce Birren, Michael S. Gilmore
Published 2012-03-01

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

by Michael Feldgarden, Vyacheslav Brover, Narjol Gonzalez-Escalona, Jonathan G. Frye, Julie Haendiges, Daniel H. Haft, Maria Hoffmann, James B. Pettengill, Arjun B. Prasad, Glenn E. Tillman, Gregory H. Tyson, William Klimke
Published 2021-06-01

Comparative Genomics of Vancomycin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content> Strains and Their Positions within the Clade Most Com...

by Veronica N. Kos, Christopher A. Desjardins, Allison Griggs, Gustavo Cerqueira, Andries Van Tonder, Matthew T. G. Holden, Paul Godfrey, Kelli L. Palmer, Kip Bodi, Emmanuel F. Mongodin, Jennifer Wortman, Michael Feldgarden, Trevor Lawley, Steven R. Gill, Brian J. Haas, Bruce Birren, Michael S. Gilmore
Published 2012-07-01

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere

by Lavanya Challagundla, Jinnethe Reyes, Iftekhar Rafiqullah, Daniel O. Sordelli, Gabriela Echaniz-Aviles, Maria E. Velazquez-Meza, Santiago Castillo-Ramírez, Nahuel Fittipaldi, Nahuel Fittipaldi, Nahuel Fittipaldi, Michael Feldgarden, Sinéad B. Chapman, Michael S. Calderwood, Lina P. Carvajal, Sandra Rincon, Blake Hanson, Blake Hanson, Paul J. Planet, Cesar A. Arias, Cesar A. Arias, Cesar A. Arias, Lorena Diaz, D. Ashley Robinson
Published 2018-08-01

Standardized metadata for human pathogen/vector genomic sequences.

by Vivien G Dugan, Scott J Emrich, Gloria I Giraldo-Calderón, Omar S Harb, Ruchi M Newman, Brett E Pickett, Lynn M Schriml, Timothy B Stockwell, Christian J Stoeckert, Dan E Sullivan, Indresh Singh, Doyle V Ward, Alison Yao, Jie Zheng, Tanya Barrett, Bruce Birren, Lauren Brinkac, Vincent M Bruno, Elizabet Caler, Sinéad Chapman, Frank H Collins, Christina A Cuomo, Valentina Di Francesco, Scott Durkin, Mark Eppinger, Michael Feldgarden, Claire Fraser, W Florian Fricke, Maria Giovanni, Matthew R Henn, Erin Hine, Julie Dunning Hotopp, Ilene Karsch-Mizrachi, Jessica C Kissinger, Eun Mi Lee, Punam Mathur, Emmanuel F Mongodin, Cheryl I Murphy, Garry Myers, Daniel E Neafsey, Karen E Nelson, William C Nierman, Julia Puzak, David Rasko, David S Roos, Lisa Sadzewicz, Joana C Silva, Bruno Sobral, R Burke Squires, Rick L Stevens, Luke Tallon, Herve Tettelin, David Wentworth, Owen White, Rebecca Will, Jennifer Wortman, Yun Zhang, Richard H Scheuermann
Published 2014-01-01

Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato

by Van der Auwera, Géraldine A., Feldgarden, Michael, Kolter, Roberto, Mahillon, Jacques
Published 2014

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

by Cerqueira, Gustavo, Earl, Ashlee, Ernst, Christoph, Grad, Yonatan, Dekker, John, Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance, Young, Sarah, Zeng, Qiandong, Delaney, Mary, Kim, Diane, Peterson, Ellena, O’Brien, Thomas F., Ferraro, Mary Jane, Hooper, David, Huang, Susan, Kirby, James, Onderdonk, Andrew, Birren, Bruce, Hung, Deborah, Cosimi, Lisa, Wortman, Jennifer, Murphy, Cheryl, Hanage, William
Published 2019