On the Road to Strain-Resolved Comparative Metagenomics

by Nicola Segata
Published 2018-04-01

At the forefront of the sequencing revolution—notes from the RNGS19 conference

by Sander Wuyts, Nicola Segata
Published 2019-05-01

Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies.

by Nicola Segata, Curtis Huttenhower
Published 2011-01-01

Multiple levels of the unknown in microbiome research

by Andrew Maltez Thomas, Nicola Segata
Published 2019-06-01

Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes.

by Annalisa Ballarini, Nicola Segata, Curtis Huttenhower, Olivier Jousson
Published 2013-01-01

Next steps after 15 stimulating years of human gut microbiome research

by Thomas Clavel, Hans‐Peter Horz, Nicola Segata, Maria Vehreschild
Published 2022-01-01

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.

by Edoardo Pasolli, Duy Tin Truong, Faizan Malik, Levi Waldron, Nicola Segata
Published 2016-07-01

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

by Francesco Asnicar, George Weingart, Timothy L. Tickle, Curtis Huttenhower, Nicola Segata
Published 2015-06-01

Profiling microbial strains in urban environments using metagenomic sequencing data

by Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Published 2018-05-01

Large scale genome reconstructions illuminate Wolbachia evolution

by Matthias Scholz, Davide Albanese, Kieran Tuohy, Claudio Donati, Nicola Segata, Omar Rota-Stabelli
Published 2020-10-01

Microbiome characterization of alpine water springs for human consumption reveals site- and usage-specific microbial signatures

by Renato Pedron, Alfonso Esposito, William Cozza, Massimo Paolazzi, Mario Cristofolini, Nicola Segata, Olivier Jousson
Published 2022-10-01

Computational meta'omics for microbial community studies

by Nicola Segata, Daniela Boernigen, Timothy L Tickle, Xochitl C Morgan, Wendy S Garrett, Curtis Huttenhower
Published 2013-01-01

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

by James Kaminski, Molly K Gibson, Eric A Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower
Published 2015-12-01

Microbial co-occurrence relationships in the human microbiome.

by Karoline Faust, J Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower
Published 2012-01-01

Effect of Gluten-Free Diet on Gut Microbiota Composition in Patients with Celiac Disease and Non-Celiac Gluten/Wheat Sensitivity

by Giacomo Caio, Lisa Lungaro, Nicola Segata, Matteo Guarino, Giorgio Zoli, Umberto Volta, Roberto De Giorgio
Published 2020-06-01

When to suspect contamination rather than colonization – lessons from a putative fetal sheep microbiome

by Simone Bihl, Marcus de Goffau, Daniel Podlesny, Nicola Segata, Fergus Shanahan, Jens Walter, W. Florian Fricke
Published 2022-01-01

Large-Scale Phylogenomics of the <italic toggle="yes">Lactobacillus casei</italic> Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

by Sander Wuyts, Stijn Wittouck, Ilke De Boeck, Camille N. Allonsius, Edoardo Pasolli, Nicola Segata, Sarah Lebeer
Published 2017-08-01

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

by Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen
Published 2020-02-01

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

by Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E Ley
Published 2013-01-01

Genomic and metagenomic insights into the microbial community of a thermal spring

by Renato Pedron, Alfonso Esposito, Irene Bianconi, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Mario Cristofolini, Nicola Segata, Olivier Jousson
Published 2019-01-01