Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration

by Karoline Faust
Published 2019-06-01

CoNet app: inference of biological association networks using Cytoscape [version 2; referees: 2 approved]

by Karoline Faust, Jeroen Raes
Published 2016-10-01

manta: a Clustering Algorithm for Weighted Ecological Networks

by Lisa Röttjers, Karoline Faust
Published 2020-02-01

Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

by Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
Published 2024-01-01

Quantifying the impact of ecological memory on the dynamics of interacting communities.

by Moein Khalighi, Guilhem Sommeria-Klein, Didier Gonze, Karoline Faust, Leo Lahti
Published 2022-06-01

Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations.

by Stefan Vet, Sophie de Buyl, Karoline Faust, Jan Danckaert, Didier Gonze, Lendert Gelens
Published 2018-01-01

Technical versus biological variability in a synthetic human gut community

by Charlotte van de Velde, Clémence Joseph, Kenneth Simoens, Jeroen Raes, Kristel Bernaerts, Karoline Faust
Published 2023-12-01

Microbial co-occurrence relationships in the human microbiome.

by Karoline Faust, J Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower
Published 2012-01-01

Quantitative microbial population study reveals geographical differences in bacterial symbionts of Ixodes ricinus

by Aleksandra I. Krawczyk, Lisa Röttjers, Manoj Fonville, Katshuisa Takumi, Willem Takken, Karoline Faust, Hein Sprong
Published 2022-08-01

miaSim: an R/Bioconductor package to easily simulate microbial community dynamics

by Yu Gao, Yağmur Şimşek, Emma Gheysen, Tuomas Borman, Yi Li, Leo Lahti, Karoline Faust, Daniel Rios Garza
Published 2023-08-01

Disentangling environmental effects in microbial association networks

by Ina Maria Deutschmann, Gipsi Lima-Mendez, Anders K. Krabberød, Jeroen Raes, Sergio M. Vallina, Karoline Faust, Ramiro Logares
Published 2021-11-01

Signatures of ecological processes in microbial community time series

by Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D. Washburne, Didier Gonze, Stefanie Widder
Published 2018-06-01

Temporal variability in quantitative human gut microbiome profiles and implications for clinical research

by Doris Vandeputte, Lindsey De Commer, Raul Y. Tito, Gunter Kathagen, João Sabino, Séverine Vermeire, Karoline Faust, Jeroen Raes
Published 2021-11-01

Correction to: Disentangling environmental effects in microbial association networks

by Ina Maria Deutschmann, Gipsi Lima-Mendez, Anders K. Krabberød, Jeroen Raes, Sergio M. Vallina, Karoline Faust, Ramiro Logares
Published 2021-12-01

Tick microbial associations at the crossroad of horizontal and vertical transmission pathways

by Aleksandra Iwona Krawczyk, Sam Röttjers, Maria João Coimbra-Dores, Dieter Heylen, Manoj Fonville, Willem Takken, Karoline Faust, Hein Sprong
Published 2022-10-01

Gut Microbiome Profiling Uncovers a Lower Abundance of <i>Butyricicoccus</i> in Advanced Stages of Chronic Kidney Disease

by Tessa Gryp, Karoline Faust, Wim Van Biesen, Geert R. B. Huys, Francis Verbeke, Marijn Speeckaert, Jeroen Raes, Mario Vaneechoutte, Marie Joossens, Griet Glorieux
Published 2021-10-01

Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

by Kevin D'hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Verónica Lloréns-Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes
Published 2019-11-01

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

by Kevin D'hoe, Stefan Vet, Karoline Faust, Frédéric Moens, Gwen Falony, Didier Gonze, Verónica Lloréns-Rico, Lendert Gelens, Jan Danckaert, Luc De Vuyst, Jeroen Raes
Published 2018-10-01

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

by Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A. Gilbert, Karoline Faust, Rob Knight, Janet K. Jansson, Cesar Cardona, Lisa Röttjers, Jianming Xu
Published 2020-06-01

Successional Stages in Infant Gut Microbiota Maturation

by Leen Beller, Ward Deboutte, Gwen Falony, Sara Vieira-Silva, Raul Yhossef Tito, Mireia Valles-Colomer, Leen Rymenans, Daan Jansen, Lore Van Espen, Maria Ioanna Papadaki, Chenyan Shi, Claude Kwe Yinda, Mark Zeller, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens
Published 2021-12-01