Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.

by Nima Nouri, Steven H Kleinstein
Published 2020-06-01

Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data

by Nima Nouri, Steven H. Kleinstein, Steven H. Kleinstein
Published 2018-07-01

Numerical solution of the Schrödinger equation in nanoscale side-contacted FED applying the finite-difference method

by Tara Ghafouri, Zohreh Golshan Bafghi, Nima Nouri, Negin Manavizadeh
Published 2020-12-01

A marker gene-based method for identifying the cell-type of origin from single-cell RNA sequencing data

by Nima Nouri, Giorgio Gaglia, Andre H. Kurlovs, Emanuele de Rinaldis, Virginia Savova
Published 2023-01-01

GBUO: “The Good, the Bad, and the Ugly” Optimizer

by Hadi Givi, Mohammad Dehghani, Zeinab Montazeri, Ruben Morales-Menendez, Ricardo A. Ramirez-Mendoza, Nima Nouri
Published 2021-02-01

Binary Spring Search Algorithm for Solving Various Optimization Problems

by Mohammad Dehghani, Zeinab Montazeri, Ali Dehghani, Om P. Malik, Ruben Morales-Menendez, Gaurav Dhiman, Nima Nouri, Ali Ehsanifar, Josep M. Guerrero, Ricardo A. Ramirez-Mendoza
Published 2021-01-01

B Cell Mobilization, Dissemination, Fine Tuning of Local Antigen Specificity and Isotype Selection in Asthma

by Line Ohm-Laursen, Line Ohm-Laursen, Hailong Meng, Kenneth B. Hoehn, Nima Nouri, Nima Nouri, Yue Jiang, Chris Clouser, Timothy G. Johnstone, Ron Hause, Balraj S. Sandhar, Balraj S. Sandhar, Nadine E. G. Upton, Nadine E. G. Upton, Elfy B. Chevretton, Raj Lakhani, Chris J. Corrigan, Chris J. Corrigan, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein, Hannah J. Gould, Hannah J. Gould
Published 2021-10-01

Young infants display heterogeneous serological responses and extensive but reversible transcriptional changes following initial immunizations

by Nima Nouri, Raquel Giacomelli Cao, Eleonora Bunsow, Djamel Nehar-Belaid, Radu Marches, Zhaohui Xu, Bennett Smith, Santtu Heinonen, Sara Mertz, Amy Leber, Gaby Smits, Fiona van der Klis, Asunción Mejías, Jacques Banchereau, Virginia Pascual, Octavio Ramilo
Published 2023-12-01

The Future of Blood Testing Is the Immunome

by Ramy A. Arnaout, Ramy A. Arnaout, Eline T. Luning Prak, Nicholas Schwab, Florian Rubelt, the Adaptive Immune Receptor Repertoire Community, Ramy A. Arnaout, Rohit Arora, Rachael Bashford-Rogers, Felix Breden, Syed Ahmad Chan Bukhari, Brian Corrie, Lindsay G. Cowell, Sol Efroni, Christopher Gooley, Victor Greiff, Jason Vander Heiden, Yoshinobu Koguchi, Ton Langerak, Theam Soon Lim, Eline Luning Prak, Encarnita Mariotti-Ferrandiz, Susanna Marquez, Pieter Meysman, Enkelejda Miho, Keshav Motwani, Nima Nouri, Milena Pavlović, Florian Rubelt, Geir Kjetil Sandve, Nicholas Schwab, Igor Snapkov, Cinque Soto, Ulrik Stervbo, Johannes Trück, Henk-Jan van den Ham, Corey Watson, Cédric R. Weber
Published 2021-03-01

Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19

by Avraham Unterman, Tomokazu S. Sumida, Nima Nouri, Xiting Yan, Amy Y. Zhao, Victor Gasque, Jonas C. Schupp, Hiromitsu Asashima, Yunqing Liu, Carlos Cosme, Wenxuan Deng, Ming Chen, Micha Sam Brickman Raredon, Kenneth B. Hoehn, Guilin Wang, Zuoheng Wang, Giuseppe DeIuliis, Neal G. Ravindra, Ningshan Li, Christopher Castaldi, Patrick Wong, John Fournier, Santos Bermejo, Lokesh Sharma, Arnau Casanovas-Massana, Chantal B. F. Vogels, Anne L. Wyllie, Nathan D. Grubaugh, Anthony Melillo, Hailong Meng, Yan Stein, Maksym Minasyan, Subhasis Mohanty, William E. Ruff, Inessa Cohen, Khadir Raddassi, The Yale IMPACT Research Team, Laura E. Niklason, Albert I. Ko, Ruth R. Montgomery, Shelli F. Farhadian, Akiko Iwasaki, Albert C. Shaw, David van Dijk, Hongyu Zhao, Steven H. Kleinstein, David A. Hafler, Naftali Kaminski, Charles S. Dela Cruz
Published 2022-01-01