KAGE: fast alignment-free graph-based genotyping of SNPs and short indels

by Ivar Grytten, Knut Dagestad Rand, Geir Kjetil Sandve
Published 2022-10-01

Ten simple rules for reproducible computational research.

by Geir Kjetil Sandve, Anton Nekrutenko, James Taylor, Eivind Hovig
Published 2013-10-01

Genome build information is an essential part of genomic track files

by Chakravarthi Kanduri, Diana Domanska, Eivind Hovig, Geir Kjetil Sandve
Published 2017-09-01

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis

by Diana Domanska, Chakravarthi Kanduri, Boris Simovski, Geir Kjetil Sandve
Published 2018-12-01

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

by Ksenia Khelik, Geir Kjetil Sandve, Alexander Johan Nederbragt, Torbjørn Rognes
Published 2020-02-01

Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy.

by Stefania Salvatore, Diana Domanska, Mollie Wood, Hedvig Nordeng, Geir Kjetil Sandve
Published 2017-01-01

Ten simple rules for quick and dirty scientific programming.

by Gabriel Balaban, Ivar Grytten, Knut Dagestad Rand, Lonneke Scheffer, Geir Kjetil Sandve
Published 2021-03-01

Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis.

by Irene Kraus Christiansen, Geir Kjetil Sandve, Martina Schmitz, Matthias Dürst, Eivind Hovig
Published 2015-01-01

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences

by Ksenia Khelik, Karin Lagesen, Geir Kjetil Sandve, Torbjørn Rognes, Alexander Johan Nederbragt
Published 2017-07-01

ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets.

by Halfdan Rydbeck, Geir Kjetil Sandve, Egil Ferkingstad, Boris Simovski, Morten Rye, Eivind Hovig
Published 2015-01-01

Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq.

by Ying Yao, Łukasz Wyrozżemski, Knut E A Lundin, Geir Kjetil Sandve, Shuo-Wang Qiao
Published 2021-01-01

The rainfall plot: its motivation, characteristics and pitfalls

by Diana Domanska, Daniel Vodák, Christin Lund-Andersen, Stefania Salvatore, Eivind Hovig, Geir Kjetil Sandve
Published 2017-05-01

Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.

by Ying Yao, Asima Zia, Łukasz Wyrożemski, Ida Lindeman, Geir Kjetil Sandve, Shuo-Wang Qiao
Published 2018-01-01

Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment

by Emilie Willoch Olstad, Hedvig Marie Egeland Nordeng, Geir Kjetil Sandve, Robert Lyle, Kristina Gervin
Published 2023-05-01

Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains.

by Corey T Watson, Giulio Disanto, Geir Kjetil Sandve, Felix Breden, Gavin Giovannoni, Sreeram V Ramagopalan
Published 2012-01-01

ANDA: an open-source tool for automated image analysis of in vitro neuronal cells

by Hallvard Austin Wæhler, Nils-Anders Labba, Ragnhild Elisabeth Paulsen, Geir Kjetil Sandve, Ragnhild Eskeland
Published 2023-10-01

Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB

by Roza B. Lemma, Marit Ledsaak, Bettina M. Fuglerud, Geir Kjetil Sandve, Ragnhild Eskeland, Odd S. Gabrielsen
Published 2021-04-01

Editorial: Genomic Colocalization and Enrichment Analyses

by Chakravarthi Kanduri, Geir Kjetil Sandve, Eivind Hovig, Eivind Hovig, Subhajyoti De, Ryan M. Layer, Ryan M. Layer
Published 2021-01-01

Machine learning-driven development of a disease risk score for COVID-19 hospitalization and mortality: a Swedish and Norwegian register-based study

by Saeed Shakibfar, Saeed Shakibfar, Jing Zhao, Jing Zhao, Jing Zhao, Huiqi Li, Hedvig Nordeng, Hedvig Nordeng, Angela Lupattelli, Angela Lupattelli, Milena Pavlovic, Milena Pavlovic, Geir Kjetil Sandve, Geir Kjetil Sandve, Fredrik Nyberg, Björn Wettermark, Mohammadhossein Hajiebrahimi, Morten Andersen, Maurizio Sessa
Published 2023-12-01

Genomic regions associated with multiple sclerosis are active in B cells.

by Giulio Disanto, Geir Kjetil Sandve, Antonio J Berlanga-Taylor, Julia M Morahan, Ruth Dobson, Gavin Giovannoni, Sreeram V Ramagopalan
Published 2012-01-01