Inference of surface membrane factors of HIV-1 infection through functional interaction networks.

by Samira Jaeger, Gokhan Ertaylan, David van Dijk, Ulf Leser, Peter Sloot
Published 2010-10-01

Promoter sequence determines the relationship between expression level and noise.

by Lucas B Carey, David van Dijk, Peter M A Sloot, Jaap A Kaandorp, Eran Segal
Published 2013-01-01

scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles

by Biqing Zhu, Yuge Wang, Li-Ting Ku, David van Dijk, Le Zhang, David A. Hafler, Hongyu Zhao
Published 2023-12-01

A machine learning method for the identification and characterization of novel COVID-19 drug targets

by Bruce Schultz, Lauren Nicole DeLong, Aliaksandr Masny, Manuel Lentzen, Tamara Raschka, David van Dijk, Andrea Zaliani, COPERIMOplus, Holger Fröhlich
Published 2023-05-01

Generating hard-to-obtain information from easy-to-obtain information: Applications in drug discovery and clinical inference

by Matthew Amodio, Dennis Shung, Daniel B. Burkhardt, Patrick Wong, Michael Simonov, Yu Yamamoto, David van Dijk, Francis Perry Wilson, Akiko Iwasaki, Smita Krishnaswamy
Published 2021-07-01

Patient factors associated with SARS‐CoV‐2 in an admitted emergency department population

by Adrian D. Haimovich, Frederick Warner, H. Patrick Young, Neal G. Ravindra, Arijit Sehanobish, Guannan Gong, Francis Perry Wilson, David vanDijk, Wade Schulz, Richard Andrew Taylor
Published 2020-08-01

Prdm6 controls heart development by regulating neural crest cell differentiation and migration

by Lingjuan Hong, Na Li, Victor Gasque, Sameet Mehta, Lupeng Ye, Yinyu Wu, Jinyu Li, Andreas Gewies, Jürgen Ruland, Karen K. Hirschi, Anne Eichmann, Caroline Hendry, David van Dijk, Arya Mani
Published 2022-03-01

Circulating markers of angiogenesis and endotheliopathy in COVID-19

by Alexander B. Pine, Matthew L. Meizlish, George Goshua, C-Hong Chang, Hanming Zhang, Jason Bishai, Parveen Bahel, Amisha Patel, Rana Gbyli, Jennifer M. Kwan, Christine H. Won, Christina Price, Charles S. Dela Cruz, Stephanie Halene, David van Dijk, John Hwa, Alfred I. Lee, Hyung J. Chun
Published 2020-11-01

Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.

by Yujiao Zhao, Matthew Amodio, Brent Vander Wyk, Bram Gerritsen, Mahesh M Kumar, David van Dijk, Kevin Moon, Xiaomei Wang, Anna Malawista, Monique M Richards, Megan E Cahill, Anita Desai, Jayasree Sivadasan, Manjunatha M Venkataswamy, Vasanthapuram Ravi, Erol Fikrig, Priti Kumar, Steven H Kleinstein, Smita Krishnaswamy, Ruth R Montgomery
Published 2020-03-01

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.

by Neal G Ravindra, Mia Madel Alfajaro, Victor Gasque, Nicholas C Huston, Han Wan, Klara Szigeti-Buck, Yuki Yasumoto, Allison M Greaney, Victoria Habet, Ryan D Chow, Jennifer S Chen, Jin Wei, Renata B Filler, Bao Wang, Guilin Wang, Laura E Niklason, Ruth R Montgomery, Stephanie C Eisenbarth, Sidi Chen, Adam Williams, Akiko Iwasaki, Tamas L Horvath, Ellen F Foxman, Richard W Pierce, Anna Marie Pyle, David van Dijk, Craig B Wilen
Published 2021-03-01

A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization

by Bruce Schultz, Andrea Zaliani, Christian Ebeling, Jeanette Reinshagen, Denisa Bojkova, Vanessa Lage-Rupprecht, Reagon Karki, Sören Lukassen, Yojana Gadiya, Neal G. Ravindra, Sayoni Das, Shounak Baksi, Daniel Domingo-Fernández, Manuel Lentzen, Mark Strivens, Tamara Raschka, Jindrich Cinatl, Lauren Nicole DeLong, Phil Gribbon, Gerd Geisslinger, Sandra Ciesek, David van Dijk, Steve Gardner, Alpha Tom Kodamullil, Holger Fröhlich, Manuel Peitsch, Marc Jacobs, Julia Hoeng, Roland Eils, Carsten Claussen, Martin Hofmann-Apitius
Published 2021-05-01

Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19

by Avraham Unterman, Tomokazu S. Sumida, Nima Nouri, Xiting Yan, Amy Y. Zhao, Victor Gasque, Jonas C. Schupp, Hiromitsu Asashima, Yunqing Liu, Carlos Cosme, Wenxuan Deng, Ming Chen, Micha Sam Brickman Raredon, Kenneth B. Hoehn, Guilin Wang, Zuoheng Wang, Giuseppe DeIuliis, Neal G. Ravindra, Ningshan Li, Christopher Castaldi, Patrick Wong, John Fournier, Santos Bermejo, Lokesh Sharma, Arnau Casanovas-Massana, Chantal B. F. Vogels, Anne L. Wyllie, Nathan D. Grubaugh, Anthony Melillo, Hailong Meng, Yan Stein, Maksym Minasyan, Subhasis Mohanty, William E. Ruff, Inessa Cohen, Khadir Raddassi, The Yale IMPACT Research Team, Laura E. Niklason, Albert I. Ko, Ruth R. Montgomery, Shelli F. Farhadian, Akiko Iwasaki, Albert C. Shaw, David van Dijk, Hongyu Zhao, Steven H. Kleinstein, David A. Hafler, Naftali Kaminski, Charles S. Dela Cruz
Published 2022-01-01