HRP-2 determines HIV-1 integration site selection in LEDGF/p75 depleted cells

by Schrijvers Rik, Vets Sofie, De Rijck Jan, Malani Nirav, Bushman Frederic D, Debyser Zeger, Gijsbers Rik
Published 2012-10-01

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

by Hwang Jennifer, Bittinger Kyle, Knight Rob, Chen Ying-Yu, Hoffmann Christian, Lewis James D, Wu Gary D, Chen Jun, Berkowsky Ronald, Nessel Lisa, Li Hongzhe, Bushman Frederic D
Published 2010-07-01

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing

by Zangger Nadine, Quenneville Simon, Malani Nirav, Ambrosini Giovanna, Groner Anna C, Meylan Sylvain, Kapopoulou Adamandia, Kauzlaric Annamaria, Rougemont Jacques, Ciuffi Angela, Bushman Frederic D, Bucher Philipp, Trono Didier
Published 2011-07-01

HTLV-1 clonality during chronic infection and BLV clonality during primary infection

by Bushman Frederic D, Berry Charles, Carter Richard, Bentley David, Gormley Niall, Melamed Anat, Malani Nirav, Rodriguez Sabrina, Clark Daniel, Gotuzzo Eduardo, Verdonck Tine, Hlela Carol, Gillet Nicolas A, Taylor Graham P, Willems Luc, Bangham Charles R M
Published 2011-06-01

Genome Editing Technologies: Defining a Path to Clinic

by Corrigan-Curay, Jacqueline, O'Reilly, Marina, Kohn, Donald B, Cannon, Paula M, Bao, Gang, Bushman, Frederic D, Carroll, Dana, Cathomen, Toni, Joung, J Keith, Roth, David, Sadelain, Michel, Scharenberg, Andrew M, von Kalle, Christof, Zhang, Feng, Jambou, Robert, Rosenthal, Eugene, Hassani, Morad, Singh, Aparna, Porteus, Matthew H
Published 2017

Comparing DNA integration site clusters with scan statistics.

by Berry, Charles C, Ocwieja, Karen E, Malani, Nirav, Bushman, Frederic D
Published 2014

Host Cell Factors in HIV Replication: Meta-Analysis of Genome-Wide Studies

by Bushman, Frederic D., Fernandes, Jason, D'Orso, Ivan, Malani, Nirav, Zhou, Honglin, Hazuda, Daria J., Espeseth, Amy S., Konig, Renate, Bandyopadhyay, Sourav, Ideker, Trey, Cagney, Gerard, Diamond, Tracy L., Goff, Stephen P., Krogan, Nevan J., Frankel, Alan D., Young, John A. T., Chanda, Sumit K.
Published 2009

INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.

by Sherman, Eric, Nobles, Christopher, Berry, Charles C, Six, Emmanuelle, Wu, Yinghua, Dryga, Anatoly, Malani, Nirav, Male, Frances, Reddy, Shantan, Bailey, Aubrey, Bittinger, Kyle, Everett, John K, Caccavelli, Laure, Drake, Mary J, Bates, Paul, Hacein-Bey-Abina, Salima, Cavazzana, Marina, Bushman, Frederic D
Published 2017

INSPIIRED: Quantification and Visualization Tools for Analyzing Integration Site Distributions.

by Berry, Charles C, Nobles, Christopher, Six, Emmanuelle, Wu, Yinghua, Malani, Nirav, Sherman, Eric, Dryga, Anatoly, Everett, John K, Male, Frances, Bailey, Aubrey, Bittinger, Kyle, Drake, Mary J, Caccavelli, Laure, Bates, Paul, Hacein-Bey-Abina, Salima, Cavazzana, Marina, Bushman, Frederic D
Published 2017

Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013

by Ravel, Jacques, Blaser, Martin J, Braun, Jonathan, Brown, Eric, Bushman, Frederic D, Chang, Eugene B, Davies, Julian, Dewey, Kathryn G, Dinan, Timothy, Dominguez-Bello, Maria, Erdman, Susan E, Finlay, B Brett, Garrett, Wendy S, Huffnagle, Gary B, Huttenhower, Curtis, Jansson, Janet, Jeffery, Ian B, Jobin, Christian, Khoruts, Alexander, Kong, Heidi H, Lampe, Johanna W, Ley, Ruth E, Littman, Dan R, Mazmanian, Sarkis K, Mills, David A, Neish, Andrew S, Petrof, Elaine, Relman, David A, Rhodes, Rosamond, Turnbaugh, Peter J, Young, Vincent B, Knight, Rob, White, Owen
Published 2014

HIV latency and integration site placement in five cell-based models

by Sherrill-Mix, Scott, Lewinski, Mary K, Famiglietti, Marylinda, Bosque, Alberto, Malani, Nirav, Ocwieja, Karen E, Berry, Charles C, Looney, David, Shan, Liang, Agosto, Luis M, Pace, Matthew J, Siliciano, Robert F, O’Doherty, Una, Guatelli, John, Planelles, Vicente, Bushman, Frederic D
Published 2013

Global landscape of HIV–human protein complexes

by Jäger, Stefanie, Cimermancic, Peter, Gulbahce, Natali, Johnson, Jeffrey R., McGovern, Kathryn E., Clarke, Starlynn C., Shales, Michael, Mercenne, Gaelle, Pache, Lars, Li, Kathy, Hernandez, Hilda, Jang, Gwendolyn M., Roth, Shoshannah L., Akiva, Eyal, Marlett, John, Stephens, Melanie, D’Orso, Ivan, Fernandes, Jason, Fahey, Marie, Mahon, Cathal, O’Donoghue, Anthony J., Todorovic, Aleksandar, Morris, John H., Maltby, David A., Alber, Tom, Cagney, Gerard, Bushman, Frederic D., Young, John A., Chanda, Sumit K., Sundquist, Wesley I., Kortemme, Tanja, Hernandez, Ryan D., Craik, Charles S., Burlingame, Alma, Sali, Andrej, Frankel, Alan D., Krogan, Nevan J.
Published 2011

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags.

by Wu, Gary D, Lewis, James D, Hoffmann, Christian, Chen, Ying-Yu, Knight, Rob, Bittinger, Kyle, Hwang, Jennifer, Chen, Jun, Berkowsky, Ronald, Nessel, Lisa, Li, Hongzhe, Bushman, Frederic D
Published 2010

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

by Hoffmann, Christian, Dollive, Serena, Grunberg, Stephanie, Chen, Jun, Li, Hongzhe, Wu, Gary D., Lewis, James D., Bushman, Frederic D.
Published 2014

Allometry and Ecology of the Bilaterian Gut Microbiome

by Sherrill-Mix, Scott, McCormick, Kevin, Lauder, Abigail, Bailey, Aubrey, Zimmerman, Laurie, Li, Yingying, Django, Jean-Bosco N., Bertolani, Paco, Colin, Christelle, Hart, John A., Hart, Terese B., Georgiev, Alexander V., Sanz, Crickette M., Morgan, David B., Atencia, Rebeca, Cox, Debby, Muller, Martin N., Sommer, Volker, Piel, Alexander K., Stewart, Fiona A., Speede, Sheri, Roman, Joe, Wu, Gary, Taylor, Josh, Bohm, Rudolf, Rose, Heather M., Carlson, John, Mjungu, Deus, Schmidt, Paul, Gaughan, Celeste, Bushman, Joyslin I., Schmidt, Ella, Bittinger, Kyle, Collman, Ronald G., Hahn, Beatrice H., Bushman, Frederic D.
Published 2018