Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

by Fraser-Liggett Claire, Shah Manesh, VerBerkmoes Nathan C, Russell Alison L, Hettich Robert L, Jansson Janet K
Published 2010-07-01

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

by Gilbert, Jack A, Meyer, Folker, Jansson, Janet, Gordon, Jeff, Pace, Norman, Tiedje, James, Ley, Ruth, Fierer, Noah, Field, Dawn, Kyrpides, Nikos, Glöckner, Frank-Oliver, Klenk, Hans-Peter, Wommack, K Eric, Glass, Elizabeth, Docherty, Kathryn, Gallery, Rachel, Stevens, Rick, Knight, Rob
Published 2010

Assembling large, complex environmental metagenomes

by Howe, Adina Chuang, Jansson, Janet, Malfatti, Stephanie A, Tringe, Susannah G, Tiedje, James M, Brown, C Titus
Published 2012

Current understanding of the human microbiome.

by Gilbert, Jack A, Blaser, Martin J, Caporaso, J Gregory, Jansson, Janet K, Lynch, Susan V, Knight, Rob
Published 2018

Uncovering the Horseshoe Effect in Microbial Analyses.

by Morton, James T, Toran, Liam, Edlund, Anna, Metcalf, Jessica L, Lauber, Christian, Knight, Rob
Published 2017

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.

by Gilbert, Jack A, Meyer, Folker, Antonopoulos, Dion, Balaji, Pavan, Brown, C Titus, Brown, Christopher T, Desai, Narayan, Eisen, Jonathan A, Evers, Dirk, Field, Dawn, Feng, Wu, Huson, Daniel, Jansson, Janet, Knight, Rob, Knight, James, Kolker, Eugene, Konstantindis, Kostas, Kostka, Joel, Kyrpides, Nikos, Mackelprang, Rachel, McHardy, Alice, Quince, Christopher, Raes, Jeroen, Sczyrba, Alexander, Shade, Ashley, Stevens, Rick
Published 2010

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.

by Prestat, Emmanuel, David, Maude M, Hultman, Jenni, Taş, Neslihan, Lamendella, Regina, Dvornik, Jill, Mackelprang, Rachel, Myrold, David D, Jumpponen, Ari, Tringe, Susannah G, Holman, Elizabeth, Mavromatis, Konstantinos, Jansson, Janet K
Published 2014

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates.

by Müller, Oliver, Bang-Andreasen, Toke, White, Richard Allen, Elberling, Bo, Taş, Neslihan, Kneafsey, Timothy, Jansson, Janet K, Øvreås, Lise
Published 2018

Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome.

by Snijders, Antoine M, Langley, Sasha A, Kim, Young-Mo, Brislawn, Colin J, Noecker, Cecilia, Zink, Erika M, Fansler, Sarah J, Casey, Cameron P, Miller, Darla R, Huang, Yurong, Karpen, Gary H, Celniker, Susan E, Brown, James B, Borenstein, Elhanan, Jansson, Janet K, Metz, Thomas O, Mao, Jian-Hua
Published 2016

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.

by Sharon, Gil, Cruz, Nikki Jamie, Kang, Dae-Wook, Gandal, Michael J, Wang, Bo, Kim, Young-Mo, Zink, Erika M, Casey, Cameron P, Taylor, Bryn C, Lane, Christianne J, Bramer, Lisa M, Isern, Nancy G, Hoyt, David W, Noecker, Cecilia, Sweredoski, Michael J, Moradian, Annie, Borenstein, Elhanan, Jansson, Janet K, Knight, Rob, Metz, Thomas O, Lois, Carlos, Geschwind, Daniel H, Krajmalnik-Brown, Rosa, Mazmanian, Sarkis K
Published 2019

Balance Trees Reveal Microbial Niche Differentiation.

by Morton, James T, Sanders, Jon, Quinn, Robert A, McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A, Song, Se Jin, Metcalf, Jessica L, Hyde, Embriette R, Lladser, Manuel, Dorrestein, Pieter C, Knight, Rob
Published 2017

Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013

by Ravel, Jacques, Blaser, Martin J, Braun, Jonathan, Brown, Eric, Bushman, Frederic D, Chang, Eugene B, Davies, Julian, Dewey, Kathryn G, Dinan, Timothy, Dominguez-Bello, Maria, Erdman, Susan E, Finlay, B Brett, Garrett, Wendy S, Huffnagle, Gary B, Huttenhower, Curtis, Jansson, Janet, Jeffery, Ian B, Jobin, Christian, Khoruts, Alexander, Kong, Heidi H, Lampe, Johanna W, Ley, Ruth E, Littman, Dan R, Mazmanian, Sarkis K, Mills, David A, Neish, Andrew S, Petrof, Elaine, Relman, David A, Rhodes, Rosamond, Turnbaugh, Peter J, Young, Vincent B, Knight, Rob, White, Owen
Published 2014

Dynamics of the human gut microbiome in inflammatory bowel disease.

by Halfvarson, Jonas, Brislawn, Colin J, Lamendella, Regina, Vázquez-Baeza, Yoshiki, Walters, William A, Bramer, Lisa M, D'Amato, Mauro, Bonfiglio, Ferdinando, McDonald, Daniel, Gonzalez, Antonio, McClure, Erin E, Dunklebarger, Mitchell F, Knight, Rob, Jansson, Janet K
Published 2017

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes.

by Ma, Bin, Wang, Yiling, Ye, Shudi, Liu, Shan, Stirling, Erinne, Gilbert, Jack A, Faust, Karoline, Knight, Rob, Jansson, Janet K, Cardona, Cesar, Röttjers, Lisa, Xu, Jianming
Published 2020

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

by Hawley, Erik R, Piao, Hailan, Scott, Nicole M, Malfatti, Stephanie, Pagani, Ioanna, Huntemann, Marcel, Chen, Amy, Glavina Del Rio, Tijana, Foster, Brian, Copeland, Alex, Jansson, Janet, Pati, Amrita, Tringe, Susannah, Gilbert, Jack A, Lorenson, Thomas D, Hess, Matthias
Published 2014

Tools for the Microbiome: Nano and Beyond

by Biteen, Julie S., Cardon, Zoe G., Chun, Miyoung, Church, George M., Dorrestein, Pieter C., Fraser, Scott E., Gilbert, Jack A., Jansson, Janet K., Knight, Rob, Miller, Jeff F., Ozcan, Aydogan, Prather, Kimberly A., Quake, Stephen R., Ruby, Edward G., Silver, Pamela A., Taha, Sharif, van den Engh, Ger, Weiss, Paul S., Wong, Gerard C. L., Wright, Aaron T., Young, Thomas D., Blainey, Paul C
Published 2017

Scientists’ warning to humanity: microorganisms and climate change

by Cavicchioli, Ricardo, Ripple, William J., Timmis, Kenneth N., Azam, Farooq, Bakken, Lars R., Baylis, Matthew, Behrenfeld, Michael J., Boetius, Antje, Boyd, Philip W., Classen, Aimée T., Crowther, Thomas W., Danovaro, Roberto, Foreman, Christine M., Huisman, Jef, Hutchins, David A., Jansson, Janet K., Karl, David M., Koskella, Britt, Mark Welch, David B., Martiny, Jennifer B.H., Moran, Mary A., Orphan, Victoria J., Reay, David S., Remais, Justin V., Rich, Virginia I., Singh, Brajesh K., Stein, Lisa Y., Stewart, Frank J., Sullivan, Matthew B., Van Oppen, Madeleine J.H., Weaver, Scott C., Webb, Eric A., Webster, Nicole S.
Published 2019

Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome.

by Kim, Young-Mo, Snijders, Antoine M, Brislawn, Colin J, Stratton, Kelly G, Zink, Erika M, Fansler, Sarah J, Metz, Thomas O, Mao, Jian-Hua, Jansson, Janet K
Published 2019

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

by Maier, Tanja V., Lucio, Marianna, Lee, Lang Ho, VerBerkmoes, Nathan C., Brislawn, Colin J., Bernhardt, Jörg, Lamendella, Regina, McDermott, Jason E., Bergeron, Nathalie, Heinzmann, Silke S., Morton, James T., González, Antonio, Ackermann, Gail, Knight, Rob, Riedel, Katharina, Krauss, Ronald M., Schmitt-Kopplin, Philippe, Jansson, Janet K.
Published 2017