HRP-2 determines HIV-1 integration site selection in LEDGF/p75 depleted cells

by Schrijvers Rik, Vets Sofie, De Rijck Jan, Malani Nirav, Bushman Frederic D, Debyser Zeger, Gijsbers Rik
Published 2012-10-01

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing

by Zangger Nadine, Quenneville Simon, Malani Nirav, Ambrosini Giovanna, Groner Anna C, Meylan Sylvain, Kapopoulou Adamandia, Kauzlaric Annamaria, Rougemont Jacques, Ciuffi Angela, Bushman Frederic D, Bucher Philipp, Trono Didier
Published 2011-07-01

HTLV-1 clonality during chronic infection and BLV clonality during primary infection

by Bushman Frederic D, Berry Charles, Carter Richard, Bentley David, Gormley Niall, Melamed Anat, Malani Nirav, Rodriguez Sabrina, Clark Daniel, Gotuzzo Eduardo, Verdonck Tine, Hlela Carol, Gillet Nicolas A, Taylor Graham P, Willems Luc, Bangham Charles R M
Published 2011-06-01

Host Cell Factors in HIV Replication: Meta-Analysis of Genome-Wide Studies

by Bushman, Frederic D., Fernandes, Jason, D'Orso, Ivan, Malani, Nirav, Zhou, Honglin, Hazuda, Daria J., Espeseth, Amy S., Konig, Renate, Bandyopadhyay, Sourav, Ideker, Trey, Cagney, Gerard, Diamond, Tracy L., Goff, Stephen P., Krogan, Nevan J., Frankel, Alan D., Young, John A. T., Chanda, Sumit K.
Published 2009

INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.

by Sherman, Eric, Nobles, Christopher, Berry, Charles C, Six, Emmanuelle, Wu, Yinghua, Dryga, Anatoly, Malani, Nirav, Male, Frances, Reddy, Shantan, Bailey, Aubrey, Bittinger, Kyle, Everett, John K, Caccavelli, Laure, Drake, Mary J, Bates, Paul, Hacein-Bey-Abina, Salima, Cavazzana, Marina, Bushman, Frederic D
Published 2017

INSPIIRED: Quantification and Visualization Tools for Analyzing Integration Site Distributions.

by Berry, Charles C, Nobles, Christopher, Six, Emmanuelle, Wu, Yinghua, Malani, Nirav, Sherman, Eric, Dryga, Anatoly, Everett, John K, Male, Frances, Bailey, Aubrey, Bittinger, Kyle, Drake, Mary J, Caccavelli, Laure, Bates, Paul, Hacein-Bey-Abina, Salima, Cavazzana, Marina, Bushman, Frederic D
Published 2017

HIV latency and integration site placement in five cell-based models

by Sherrill-Mix, Scott, Lewinski, Mary K, Famiglietti, Marylinda, Bosque, Alberto, Malani, Nirav, Ocwieja, Karen E, Berry, Charles C, Looney, David, Shan, Liang, Agosto, Luis M, Pace, Matthew J, Siliciano, Robert F, O’Doherty, Una, Guatelli, John, Planelles, Vicente, Bushman, Frederic D
Published 2013

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.

by Ocwieja, Karen E, Brady, Troy L, Ronen, Keshet, Huegel, Alyssa, Roth, Shoshannah L, Schaller, Torsten, James, Leo C, Towers, Greg J, Young, John AT, Chanda, Sumit K, König, Renate, Malani, Nirav, Berry, Charles C, Bushman, Frederic D
Published 2011