MetaCarvel: linking assembly graph motifs to biological variants

by Jay Ghurye, Todd Treangen, Marcus Fedarko, W. Judson Hervey, Mihai Pop
Published 2019-08-01

Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides.

by R A Leo Elworth, Christian Diaz, Jing Yang, Paul de Figueiredo, Krista Ternus, Todd Treangen
Published 2020-08-01

Analysis of bronchoalveolar lavage fluid metatranscriptomes among patients with COVID-19 disease

by Michael Jochum, Michael D. Lee, Kristen Curry, Victoria Zaksas, Elizabeth Vitalis, Todd Treangen, Kjersti Aagaard, Krista L. Ternus
Published 2022-12-01

Alterations to the gut microbiome after sport-related concussion in a collegiate football players cohort: A pilot study

by Sirena Soriano, Kristen Curry, Saeed S. Sadrameli, Qi Wang, Michael Nute, Elizabeth Reeves, Rasadul Kabir, Jonathan Wiese, Amber Criswell, Sarah Schodrof, Gavin W. Britz, Rajan Gadhia, Kenneth Podell, Todd Treangen, Sonia Villapol
Published 2022-05-01

Natural tannin extracts supplementation for COVID-19 patients (TanCOVID): a structured summary of a study protocol for a randomized controlled trial

by Silvia Molino, Andrea Pisarevsky, Fabiana Lopez Mingorance, Patricia Vega, Juan Pablo Stefanolo, Julieta Repetti, Guillermina Ludueña, Pablo Pepa, Juan Ignacio Olmos, Marcelo Rodriguez Fermepin, Tatiana Uehara, Sonia Villapol, Tor Savidge, Todd Treangen, Elisa Viciani, Andrea Castagnetti, Maria Marta Piskorz
Published 2021-04-01

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 2 approv...

by Fawaz Dabbaghie, Divya Kalra, Elbay Aliyev, Wouter De Coster, Kimberley Billingsley, Nicolae Sapoval, Shangzhe Zhang, Gaojianyong Wang, Kimberly Walker, Deepak Choubey, Li Chuin Chong, Alejandro R. Gener, Yilei Fu, Pavel Avdeyev, Ben Busby, Daniel Paiva Agustinho, Sairam Behera, Enrico R. Barrozo, Luis F Paulin, Ahmad Al Khleifat, Susanne P. Pfeifer, Muhammad Sohail Raza, Guangyi Chen, Rebecca Lowdon, Daniela C. Soto, David Molik, Anneri Lötter, Chunhsuan Lo, Suresh Kumar Mendem, Sina Majidian, Damaris Lattimer, Priya Lakra, Bai-Wei Lo, Chia-Sin Liew, Rupesh K. Kesharwani, Maria Jose, Jędrzej Kubica, Sree Rohit Raj Kolora, Wolfram Höps, David Morgan Henke, Michael D. Jochum, Anastasia Illarionova, Fritz J Sedlazeck, Weiyu Zhou, Todd Treangen, Philippe Sanio, Jianzhi Yang, Tiancheng Xu, Ramanandan Prabhakaran, Chi-Lam Poon, Aditi Sammi, Marie Saitou, Hiroko Ohmiya, Rajarshi Mondal, Najeeb Syed, Carolina Peralta, Nasrin Parvin, Timothy Hefferon, Medhat Mahmoud
Published 2022-05-01