PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation

by Medhat Mahmoud, Harshavardhan Doddapaneni, Winston Timp, Fritz J. Sedlazeck
Published 2021-09-01

A multi-task convolutional deep neural network for variant calling in single molecule sequencing

by Ruibang Luo, Fritz J. Sedlazeck, Tak-Wah Lam, Michael C. Schatz
Published 2019-03-01

Multiple genome alignment in the telomere-to-telomere assembly era

by Bryce Kille, Advait Balaji, Fritz J. Sedlazeck, Michael Nute, Todd J. Treangen
Published 2022-08-01

Genomic variant benchmark: if you cannot measure it, you cannot improve it

by Sina Majidian, Daniel Paiva Agustinho, Chen-Shan Chin, Fritz J. Sedlazeck, Medhat Mahmoud
Published 2023-10-01

Author Correction: Towards accurate and reliable resolution of structural variants for clinical diagnosis

by Zhichao Liu, Ruth Roberts, Timothy R. Mercer, Joshua Xu, Fritz J. Sedlazeck, Weida Tong
Published 2022-09-01

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning

by Ruibang Luo, Fritz J. Sedlazeck, Charlotte A. Darby, Stephen M. Kelly, Michael C. Schatz
Published 2017-01-01

Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data

by Yunxi Liu, Joshua Kearney, Medhat Mahmoud, Bryce Kille, Fritz J. Sedlazeck, Todd J. Treangen
Published 2022-03-01

Towards accurate and reliable resolution of structural variants for clinical diagnosis

by Zhichao Liu, Ruth Roberts, Timothy R. Mercer, Joshua Xu, Fritz J. Sedlazeck, Weida Tong
Published 2022-03-01

Truvari: refined structural variant comparison preserves allelic diversity

by Adam C. English, Vipin K. Menon, Richard A. Gibbs, Ginger A. Metcalf, Fritz J. Sedlazeck
Published 2022-12-01

Structural variant calling: the long and the short of it

by Medhat Mahmoud, Nastassia Gobet, Diana Ivette Cruz-Dávalos, Ninon Mounier, Christophe Dessimoz, Fritz J. Sedlazeck
Published 2019-11-01

Tools for annotation and comparison of structural variation [version 1; referees: 1 approved, 2 approved with reservations]

by Fritz J. Sedlazeck, Andi Dhroso, Dale L. Bodian, Justin Paschall, Farrah Hermes, Justin M. Zook
Published 2017-10-01

SVhound: detection of regions that harbor yet undetected structural variation

by Luis F. Paulin, Muthuswamy Raveendran, R. Alan Harris, Jeffrey Rogers, Arndt von Haeseler, Fritz J. Sedlazeck
Published 2023-01-01

MethPhaser: methylation-based long-read haplotype phasing of human genomes

by Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J. Treangen, Fritz J. Sedlazeck
Published 2024-06-01

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

by Huy Q Dinh, Manu Dubin, Fritz J Sedlazeck, Nicole Lettner, Ortrun Mittelsten Scheid, Arndt von Haeseler
Published 2012-01-01

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

by Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, Xingang Wang, Sara Goodwin, Fritz J. Sedlazeck, Zachary B. Lippman, Michael C. Schatz
Published 2019-10-01

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

by Daniel C. Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw, Charalampos Rallis, Francois Balloux, Christophe Dessimoz, Jürg Bähler, Fritz J. Sedlazeck
Published 2017-01-01

Frequent spontaneous structural rearrangements promote rapid genome diversification in a Brassica napus F1 generation

by Mauricio Orantes-Bonilla, Manar Makhoul, HueyTyng Lee, Harmeet Singh Chawla, Paul Vollrath, Anna Langstroff, Fritz J. Sedlazeck, Jun Zou, Rod J. Snowdon
Published 2022-11-01

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways.

by Michael Tscherner, Florian Zwolanek, Sabrina Jenull, Fritz J Sedlazeck, Andriy Petryshyn, Ingrid E Frohner, John Mavrianos, Neeraj Chauhan, Arndt von Haeseler, Karl Kuchler
Published 2015-10-01

VariantSurvival: a tool to identify genotype–treatment response

by Thomas Krannich, Marina Herrera Sarrias, Hiba Ben Aribi, Moustafa Shokrof, Alfredo Iacoangeli, Ammar Al-Chalabi, Fritz J. Sedlazeck, Ben Busby, Ahmad Al Khleifat
Published 2023-10-01

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

by Sven Schenk, Stephanie C Bannister, Fritz J Sedlazeck, Dorothea Anrather, Bui Quang Minh, Andrea Bileck, Markus Hartl, Arndt von Haeseler, Christopher Gerner, Florian Raible, Kristin Tessmar-Raible
Published 2019-02-01