Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates

by David E. Northover, Stephen D. Shank, David A. Liberles
Published 2020-02-01

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics

by Stephen D. Shank, Steven Weaver, Sergei L. Kosakovsky Pond
Published 2018-07-01

Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes.

by Alexander G Lucaci, Sadie R Wisotsky, Stephen D Shank, Steven Weaver, Sergei L Kosakovsky Pond
Published 2021-01-01

RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis.

by Alexander G Lucaci, Jordan D Zehr, Stephen D Shank, Dave Bouvier, Alexander Ostrovsky, Han Mei, Anton Nekrutenko, Darren P Martin, Sergei L Kosakovsky Pond
Published 2022-01-01

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

by Aysam Guerler, Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko
Published 2023-06-01

Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City

by Joel O. Wertheim, Jade C. Wang, Mindy Leelawong, Darren P. Martin, Jennifer L. Havens, Moinuddin A. Chowdhury, Jonathan E. Pekar, Helly Amin, Anthony Arroyo, Gordon A. Awandare, Hoi Yan Chow, Edimarlyn Gonzalez, Elizabeth Luoma, Collins M. Morang’a, Anton Nekrutenko, Stephen D. Shank, Stefan Silver, Peter K. Quashie, Jennifer L. Rakeman, Victoria Ruiz, Lucia V. Torian, Tetyana I. Vasylyeva, Sergei L. Kosakovsky Pond, Scott Hughes
Published 2022-06-01

A short note on rank-2 relaxation for waveform inversion

by Cosse, Augustin M., Shank, Stephen, Demanet, Laurent
Published 2018