PointCloudXplore: a visualization tool for 3D gene expression data

by Rubel, Oliver, Weber, Gunther H., Keranen, Soile V.E., Fowlkes, Charles C., Luengo Hendriks, Cristian L., Simirenko, Lisa, Shah, Nameeta Y., Eisen, Michael B., Biggn, Mark D., Hagen, Hans, Sudar, Damir J., Malik, Jitendra, Knowles, David W., Hamann, Bernd
Published 2006

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

by Li, Xiao-Yong, MacArthur, Stewart, Bourgon, Richard, Nix, David, Pollard, Daniel A., Iyer, Venky N., Hechmer, Aaron, Simirenko, Lisa, Stapleton, Mark, Luengo Hendriks, Cris L., Chu, Hou Cheng, Ogawa, Nobuo, Inwood, William, Sementchenko, Victor, Beaton, Amy, Weiszmann, Richard, Celniker, Susan E., Knowles, David W., Gingeras, Tom, Speed, Terence P., Eisen, Michael B., Biggin, Mark D.
Published 2008

Virtual embryos as tools for 3d gene expression analyses:

by Keranen, Soile V.E., Hendriks, Cristian L. Luengo, Fowlkes, Charless C., Simirenko, Lisa, Weber, Gunther H., Ruebel, Oliver, Huang, Min-Yu, DePace, Angela H., Henriquez, Clara N., Li, Xiao-Yong, Chu, Hou C., Kaszuba, David W., Beaton, Amy, Celniker, S., Hamann, Bernd, Eisen, Michael B., Malik, Jitendra, Knowles, David W., Biggin, Mark D.
Published 2007

An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology.

by Oberortner, Ernst, Evans, Robert, Meng, Xianwei, Nath, Sangeeta, Plahar, Hector, Simirenko, Lisa, Tarver, Angela, Deutsch, Samuel, Hillson, Nathan J, Cheng, Jan-Fang
Published 2020

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

by MacArthur, Stewart, Li, Xiao-Yong, Li, Jingyi, Brown, James B, Chu, Hou Cheng, Zeng, Lucy, Grondona, Brandi P, Hechmer, Aaron, Simirenko, Lisa, Keränen, Soile VE, Knowles, David W, Stapleton, Mark, Bickel, Peter, Biggin, Mark D, Eisen, Michael B
Published 2009

A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila

by Fowlkes, Charless C, Eckenrode, Kelly B, Bragdon, Meghan D, Meyer, Miriah, Wunderlich, Zeba, Simirenko, Lisa, Luengo Hendriks, Cris L, Keränen, Soile V. E, Henriquez, Clara, Knowles, David W, Biggin, Mark D, Eisen, Michael B, DePace, Angela H, Kopp, Artyom
Published 2011

A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila

by Fowlkes, Charless C., Eckenrode, Kelly B., Bragdon, Meghan D., Meyer, Miriah, Wunderlich, Zeba, Simirenko, Lisa, Luengo Hendriks, Cris L., Keränen, Soile E., Henriquez, Clara, Knowles, David W., Biggin, Mark D., Eisen, Michael B., DePace, Angela H.
Published 2011