Nonparametric identification of regulatory interactions from spatial and temporal gene expression data

by Aswani Anil, Keränen Soile VE, Brown James, Fowlkes Charless C, Knowles David W, Biggin Mark D, Bickel Peter, Tomlin Claire J
Published 2010-08-01

PointCloudXplore: a visualization tool for 3D gene expression data

by Rubel, Oliver, Weber, Gunther H., Keranen, Soile V.E., Fowlkes, Charles C., Luengo Hendriks, Cristian L., Simirenko, Lisa, Shah, Nameeta Y., Eisen, Michael B., Biggn, Mark D., Hagen, Hans, Sudar, Damir J., Malik, Jitendra, Knowles, David W., Hamann, Bernd
Published 2006

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

by Li, Xiao-Yong, MacArthur, Stewart, Bourgon, Richard, Nix, David, Pollard, Daniel A., Iyer, Venky N., Hechmer, Aaron, Simirenko, Lisa, Stapleton, Mark, Luengo Hendriks, Cris L., Chu, Hou Cheng, Ogawa, Nobuo, Inwood, William, Sementchenko, Victor, Beaton, Amy, Weiszmann, Richard, Celniker, Susan E., Knowles, David W., Gingeras, Tom, Speed, Terence P., Eisen, Michael B., Biggin, Mark D.
Published 2008

Virtual embryos as tools for 3d gene expression analyses:

by Keranen, Soile V.E., Hendriks, Cristian L. Luengo, Fowlkes, Charless C., Simirenko, Lisa, Weber, Gunther H., Ruebel, Oliver, Huang, Min-Yu, DePace, Angela H., Henriquez, Clara N., Li, Xiao-Yong, Chu, Hou C., Kaszuba, David W., Beaton, Amy, Celniker, S., Hamann, Bernd, Eisen, Michael B., Malik, Jitendra, Knowles, David W., Biggin, Mark D.
Published 2007

Comments on the paper "A novel 3D wavelet-based filter for visualizing features in noisy biological data", by Moss et al.

by Luengo Hendriks, Cris L., Knowles, David W.
Published 2006

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data

by Rübel, Oliver, Ahern, Sean, Bethel, E. Wes, Biggin, Mark D., Childs, Hank, Cormier-Michel, Estelle, DePace, Angela, Eisen, Michael B., Fowlkes, Charless C., Geddes, Cameron R., Hagen, Hans, Hamann, Bernd, Huang, Min-Yu, Keränen, Soile E., Knowles, David W., Hendriks, Cris Luengo, Malik, Jitendra, Meredith, Jeremy, Messmer, Peter, Prabhat, -, Ushizima, Daniela, Weber, Gunther H., Wu, Kesheng
Published 2010

Phenotype Clustering of Breast Epithelial Cells in Confocal Images based on Nuclear Protein Distribution Analysis

by Long, Fuhui, Peng, Hanchuan, Sudar, Damir, Levievre, Sophie A., Knowles, David W.
Published 2006

Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views

by Weber, Gunther H., Rübel, Oliver, Huang, Min-Yu, DePace, Angela H., Fowlkes, Charless C., Keränen, Soile E., Luengo Hendriks, Cris L., Hagen, Hans, Knowles, David W., Malik, Jitendra, Biggin, Mark D., Hamann, Bernd
Published 2009

A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila

by Fowlkes, Charless C., Eckenrode, Kelly B., Bragdon, Meghan D., Meyer, Miriah, Wunderlich, Zeba, Simirenko, Lisa, Luengo Hendriks, Cris L., Keränen, Soile E., Henriquez, Clara, Knowles, David W., Biggin, Mark D., Eisen, Michael B., DePace, Angela H.
Published 2011