Inferring tumor progression in large datasets.

by Mohammadreza Mohaghegh Neyshabouri, Seong-Hwan Jun, Jens Lagergren
Published 2020-10-01

Scuphr: A probabilistic framework for cell lineage tree reconstruction.

by Hazal Koptagel, Seong-Hwan Jun, Joanna Hård, Jens Lagergren
Published 2024-05-01

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm

by Seong-Hwan Jun, Hassan Nasif, Chris Jennings-Shaffer, David H Rich, Anna Kooperberg, Mathieu Fourment, Cheng Zhang, Marc A Suchard, Frederick A Matsen
Published 2023-07-01

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics

by Seong-Hwan Jun, Hosein Toosi, Jeff Mold, Camilla Engblom, Xinsong Chen, Ciara O’Flanagan, Michael Hagemann-Jensen, Rickard Sandberg, Samuel Aparicio, Johan Hartman, Andrew Roth, Jens Lagergren
Published 2023-02-01

Distinct immune responses associated with vaccination status and protection outcomes after malaria challenge.

by Damian A Oyong, Fergal J Duffy, Maxwell L Neal, Ying Du, Jason Carnes, Katharine V Schwedhelm, Nina Hertoghs, Seong-Hwan Jun, Helen Miller, John D Aitchison, Stephen C De Rosa, Evan W Newell, M Juliana McElrath, Suzanne M McDermott, Kenneth D Stuart
Published 2023-05-01