BAMboozle removes genetic variation from human sequence data for open data sharing

by Christoph Ziegenhain, Rickard Sandberg
Published 2021-10-01

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses.

by Helena Storvall, Daniel Ramsköld, Rickard Sandberg
Published 2013-01-01

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data.

by Daniel Ramsköld, Eric T Wang, Christopher B Burge, Rickard Sandberg
Published 2009-12-01

Q&A: using Patch-seq to profile single cells

by Cathryn R. Cadwell, Rickard Sandberg, Xiaolong Jiang, Andreas S. Tolias
Published 2017-07-01

Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations.

by Lina-Marcela Diaz-Gallo, Boel Brynedal, Helga Westerlind, Rickard Sandberg, Daniel Ramsköld
Published 2021-01-01

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

by George Hunt, Roshan Vaid, Sergei Pirogov, Alexander Pfab, Christoph Ziegenhain, Rickard Sandberg, Johan Reimegård, Mattias Mannervik
Published 2024-01-01

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling

by Susanne Nichterwitz, Geng Chen, Julio Aguila Benitez, Marlene Yilmaz, Helena Storvall, Ming Cao, Rickard Sandberg, Qiaolin Deng, Eva Hedlund
Published 2016-07-01

Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo

by Eszter Posfai, Sophie Petropoulos, Flavia Regina Oliveira de Barros, John Paul Schell, Igor Jurisica, Rickard Sandberg, Fredrik Lanner, Janet Rossant
Published 2017-02-01

NASC-seq monitors RNA synthesis in single cells

by Gert-Jan Hendriks, Lisa A. Jung, Anton J. M. Larsson, Michael Lidschreiber, Oscar Andersson Forsman, Katja Lidschreiber, Patrick Cramer, Rickard Sandberg
Published 2019-07-01

Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance.

by Anton J M Larsson, Christoph Ziegenhain, Michael Hagemann-Jensen, Björn Reinius, Tina Jacob, Tim Dalessandri, Gert-Jan Hendriks, Maria Kasper, Rickard Sandberg
Published 2021-03-01

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics

by Seong-Hwan Jun, Hosein Toosi, Jeff Mold, Camilla Engblom, Xinsong Chen, Ciara O’Flanagan, Michael Hagemann-Jensen, Rickard Sandberg, Samuel Aparicio, Johan Hartman, Andrew Roth, Jens Lagergren
Published 2023-02-01

Inflammatory, metabolic, and sex-dependent gene-regulatory dynamics of microglia and macrophages in neonatal hippocampus after hypoxia-ischemia

by Elena Di Martino, Anoop Ambikan, Daniel Ramsköld, Takashi Umekawa, Sarantis Giatrellis, Davide Vacondio, Alejandro Lastra Romero, Marta Gómez Galán, Rickard Sandberg, Ulrika Ådén, Volker M. Lauschke, Ujjwal Neogi, Klas Blomgren, Julianna Kele
Published 2024-04-01

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells

by Ábel Vértesy, Wibowo Arindrarto, Matthias S. Roost, Björn Reinius, Vanessa Torrens-Juaneda, Monika Bialecka, Ioannis Moustakas, Yavuz Ariyurek, Ewart Kuijk, Hailiang Mei, Rickard Sandberg, Alexander van Oudenaarden, Susana M. Chuva de Sousa Lopes
Published 2018-05-01

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration

by Ahmed Elewa, Heng Wang, Carlos Talavera-López, Alberto Joven, Gonçalo Brito, Anoop Kumar, L. Shahul Hameed, May Penrad-Mobayed, Zeyu Yao, Neda Zamani, Yamen Abbas, Ilgar Abdullayev, Rickard Sandberg, Manfred Grabherr, Björn Andersson, András Simon
Published 2017-12-01

Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

by Federico Scala, Dmitry Kobak, Shen Shan, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Published 2019-11-01

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

by Federico Scala, Dmitry Kobak, Shen Shan, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan, Stelios Papadopoulos, Saumil Surendra Patel, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Published 2019-09-01

Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex

by Cathryn R Cadwell, Federico Scala, Paul G Fahey, Dmitry Kobak, Shalaka Mulherkar, Fabian H Sinz, Stelios Papadopoulos, Zheng H Tan, Per Johnsson, Leonard Hartmanis, Shuang Li, Ronald J Cotton, Kimberley F Tolias, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas Savas Tolias
Published 2020-03-01

Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

by Bing He, Ping Chen, Sonia Zambrano, Dina Dabaghie, Yizhou Hu, Katja Möller-Hackbarth, David Unnersjö-Jess, Gül Gizem Korkut, Emmanuelle Charrin, Marie Jeansson, Maria Bintanel-Morcillo, Anna Witasp, Lars Wennberg, Annika Wernerson, Bernhard Schermer, Thomas Benzing, Patrik Ernfors, Christer Betsholtz, Mark Lal, Rickard Sandberg, Jaakko Patrakka
Published 2021-04-01

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome

by Oscar E. Simonson, Dimitrios Mougiakakos, Nina Heldring, Giulio Bassi, Henrik J. Johansson, Magnus Dalén, Regina Jitschin, Sergey Rodin, Matthias Corbascio, Samir El Andaloussi, Oscar P.B. Wiklander, Joel Z. Nordin, Johan Skog, Charlotte Romain, Tina Koestler, Laila Hellgren-Johansson, Petter Schiller, Per-Olof Joachimsson, Hans Hägglund, Mattias Mattsson, Janne Lehtiö, Omid R. Faridani, Rickard Sandberg, Olle Korsgren, Mauro Krampera, Daniel J. Weiss, Karl-Henrik Grinnemo, Katarina Le Blanc
Published 2016-06-01