On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities

by Sansone Susanna-Assunta, Rocca-Serra Philippe
Published 2012-07-01

Selected papers from the 12^th annual Bio-Ontologies meeting

by Soldatova Larisa N, Lord Phillip, Sansone Susanna-Assunta, Stephens Susie M, Shah Nigam H
Published 2010-06-01

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining

by Rebholz-Schuhmann Dietrich, Sansone Susanna-Assunta, Schober Daniel, Spasić Irena, Kell Douglas B, Paton Norman W
Published 2008-04-01

The use of concept maps during knowledge elicitation in ontology development processes – the nutrigenomics use case

by Taylor Chris, Stevens Robert, Rocca-Serra Philippe, Castro Alexander, Nashar Karim, Ragan Mark A, Sansone Susanna-Assunta
Published 2006-05-01

Survey-based naming conventions for use in OBO Foundry ontology development

by Mungall Chris, Lomax Jane, Kusnierczyk Waclaw, Lewis Suzanna E, Smith Barry, Schober Daniel, Taylor Chris F, Rocca-Serra Philippe, Sansone Susanna-Assunta
Published 2009-04-01

Modeling biomedical experimental processes with OBI

by Brinkman Ryan R, Courtot Mélanie, Derom Dirk, Fostel Jennifer M, He Yongqun, Lord Phillip, Malone James, Parkinson Helen, Peters Bjoern, Rocca-Serra Philippe, Ruttenberg Alan, Sansone Susanna-Assunta, Soldatova Larisa N, Stoeckert Christian J, Turner Jessica A, Zheng Jie
Published 2010-06-01

The genomic standards consortium: bringing standards to life for microbial ecology.

by Yilmaz, Pelin, Gilbert, Jack A, Knight, Rob, Amaral-Zettler, Linda, Karsch-Mizrachi, Ilene, Cochrane, Guy, Nakamura, Yasukazu, Sansone, Susanna-Assunta, Glöckner, Frank Oliver, Field, Dawn
Published 2011

COVID-19 pandemic reveals the peril of ignoring metadata standards.

by Schriml, Lynn M, Chuvochina, Maria, Davies, Neil, Eloe-Fadrosh, Emiley A, Finn, Robert D, Hugenholtz, Philip, Hunter, Christopher I, Hurwitz, Bonnie L, Kyrpides, Nikos C, Meyer, Folker, Mizrachi, Ilene Karsch, Sansone, Susanna-Assunta, Sutton, Granger, Tighe, Scott, Walls, Ramona
Published 2020

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.

by Gilbert, Jack A, Bao, Yiming, Wang, Hui, Sansone, Susanna-Assunta, Edmunds, Scott C, Morrison, Norman, Meyer, Folker, Schriml, Lynn M, Davies, Neil, Sterk, Peter, Wilkening, Jared, Garrity, George M, Field, Dawn, Robbins, Robert, Smith, Daniel P, Mizrachi, Ilene, Moreau, Corrie
Published 2012

Toward unrestricted use of public genomic data.

by Amann, Rudolf I, Baichoo, Shakuntala, Blencowe, Benjamin J, Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick SG, Colwell, Rita R, Daffonchio, Daniele G, Danchin, Antoine, de Lorenzo, Victor, Dorrestein, Pieter C, Finn, Robert D, Fraser, Claire M, Gilbert, Jack A, Hallam, Steven J, Hugenholtz, Philip, Ioannidis, John PA, Jansson, Janet K, Kim, Jihyun F, Klenk, Hans-Peter, Klotz, Martin G, Knight, Rob, Konstantinidis, Konstantinos T, Kyrpides, Nikos C, Mason, Christopher E, McHardy, Alice C, Meyer, Folker, Ouzounis, Christos A, Patrinos, Aristides AN, Podar, Mircea, Pollard, Katherine S, Ravel, Jacques, Muñoz, Alejandro Reyes, Roberts, Richard J, Rosselló-Móra, Ramon, Sansone, Susanna-Assunta, Schloss, Patrick D, Schriml, Lynn M, Setubal, João C, Sorek, Rotem, Stevens, Rick L, Tiedje, James M, Turjanski, Adrian, Tyson, Gene W, Ussery, David W, Weinstock, George M, White, Owen, Whitman, William B, Xenarios, Ioannis
Published 2019

Modeling biomedical experimental processes with OBI

by Brinkman, Ryan R, Courtot, Mélanie, Derom, Dirk, Fostel, Jennifer M, He, Yongqun, Lord, Phillip, Malone, James, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Soldatova, Larisa N, Stoeckert, Christian J, Turner, Jessica A, Zheng, Jie, obi-users@googlegroups.com
Published 2010

The Genomic Standards Consortium.

by Field, Dawn, Amaral-Zettler, Linda, Cochrane, Guy, Cole, James R, Dawyndt, Peter, Garrity, George M, Gilbert, Jack, Glöckner, Frank Oliver, Hirschman, Lynette, Karsch-Mizrachi, Ilene, Klenk, Hans-Peter, Knight, Rob, Kottmann, Renzo, Kyrpides, Nikos, Meyer, Folker, San Gil, Inigo, Sansone, Susanna-Assunta, Schriml, Lynn M, Sterk, Peter, Tatusova, Tatiana, Ussery, David W, White, Owen, Wooley, John
Published 2011

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

by Rocca-Serra, Philippe, Brandizi, Marco, Maguire, Eamonn, Sklyar, Nataliya, Taylor, Chris, Begley, Kimberly, Field, Dawn, Harris, Stephen, Hide, Winston, Hofmann, Oliver Marc, Neumann, Steffen, Sterk, Peter, Tong, Weida, Sansone, Susanna-Assunta
Published 2013

DATS, the data tag suite to enable discoverability of datasets.

by Sansone, Susanna-Assunta, Gonzalez-Beltran, Alejandra, Rocca-Serra, Philippe, Alter, George, Grethe, Jeffrey S, Xu, Hua, Fore, Ian M, Lyle, Jared, Gururaj, Anupama E, Chen, Xiaoling, Kim, Hyeon-Eui, Zong, Nansu, Li, Yueling, Liu, Ruiling, Ozyurt, I Burak, Ohno-Machado, Lucila
Published 2017

Conceptualizing a Genomics Software Institute (GSI).

by Gilbert, Jack A, Catlett, Charlie, Desai, Narayan, Knight, Rob, White, Owen, Robbins, Robert, Sankaran, Rajesh, Sansone, Susanna-Assunta, Field, Dawn, Meyer, Folker
Published 2012

The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework

by Sui, Shannan Ho, Merrill, Emily, Gehlenborg, Nils, Haseley, Psalm, Sytchev, Ilya, Park, Richard, Rocca-Serra, Philippe, Corlosquet, Stephane, Gonzalez-Beltran, Alejandra, Maguire, Eamonn, Hofmann, Oliver, Park, Peter, Das, Sudeshna, Sansone, Susanna-Assunta, Hide, Winston
Published 2014

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.

by Gaudet, Pascale, Arighi, Cecilia, Bastian, Frederic, Bateman, Alex, Blake, Judith A, Cherry, Michael J, D'Eustachio, Peter, Finn, Robert, Giglio, Michelle, Hirschman, Lynette, Kania, Renate, Klimke, William, Martin, Maria Jesus, Karsch-Mizrachi, Ilene, Munoz-Torres, Monica, Natale, Darren, O'Donovan, Claire, Ouellette, Francis, Pruitt, Kim D, Robinson-Rechavi, Marc, Sansone, Susanna-Assunta, Schofield, Paul, Sutton, Granger, Van Auken, Kimberly, Vasudevan, Sona, Wu, Cathy, Young, Jasmine, Mazumder, Raja
Published 2019

The FAIR Guiding Principles for scientific data management and stewardship.

by Wilkinson, Mark D, Dumontier, Michel, Aalbersberg, I Jsbrand Jan, Appleton, Gabrielle, Axton, Myles, Baak, Arie, Blomberg, Niklas, Boiten, Jan-Willem, da Silva Santos, Luiz Bonino, Bourne, Philip E, Bouwman, Jildau, Brookes, Anthony J, Clark, Tim, Crosas, Mercè, Dillo, Ingrid, Dumon, Olivier, Edmunds, Scott, Evelo, Chris T, Finkers, Richard, Gonzalez-Beltran, Alejandra, Gray, Alasdair JG, Groth, Paul, Goble, Carole, Grethe, Jeffrey S, Heringa, Jaap, 't Hoen, Peter AC, Hooft, Rob, Kuhn, Tobias, Kok, Ruben, Kok, Joost, Lusher, Scott J, Martone, Maryann E, Mons, Albert, Packer, Abel L, Persson, Bengt, Rocca-Serra, Philippe, Roos, Marco, van Schaik, Rene, Sansone, Susanna-Assunta, Schultes, Erik, Sengstag, Thierry, Slater, Ted, Strawn, George, Swertz, Morris A, Thompson, Mark, van der Lei, Johan, van Mulligen, Erik, Velterop, Jan, Waagmeester, Andra, Wittenburg, Peter, Wolstencroft, Katherine, Zhao, Jun, Mons, Barend
Published 2016

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

by McMurry, Julie A, Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K, Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C, Jimenez, Rafael C, Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R, Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L, Soiland-Reyes, Stian, Stanford, Natalie J, Swainston, Neil, Washington, Nicole, Williams, Alan R, Wimalaratne, Sarala M, Winfree, Lilly M, Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J, Haendel, Melissa A, Parkinson, Helen
Published 2017

Data standards can boost metabolomics research, and if there is a will, there is a way.

by Rocca-Serra, Philippe, Salek, Reza M, Arita, Masanori, Correa, Elon, Dayalan, Saravanan, Gonzalez-Beltran, Alejandra, Ebbels, Tim, Goodacre, Royston, Hastings, Janna, Haug, Kenneth, Koulman, Albert, Nikolski, Macha, Oresic, Matej, Sansone, Susanna-Assunta, Schober, Daniel, Smith, James, Steinbeck, Christoph, Viant, Mark R, Neumann, Steffen
Published 2020