Predicting active site residue annotations in the Pfam database

by Finn Robert D, Bateman Alex, Mistry Jaina
Published 2007-08-01

Integrating sequence and structural biology with DAS

by Finn Robert D, Kulesha Eugene, Down Thomas A, Prlić Andreas, Kähäri Andreas, Hubbard Tim JP
Published 2007-09-01

Integrating biological data – the Distributed Annotation System

by Jones Philip, Jimenez Rafael C, Hubbard Tim JP, Hermjakob Henning, Finn Robert D, Down Thomas, Blankenburg Hagen, Birney Ewan, Albrecht Mario, Jenkinson Andrew M, Kähäri Andreas, Kulesha Eugene, Macías José R, Reeves Gabrielle A, Prlić Andreas
Published 2008-07-01

The genome of the simian and human malaria parasite Plasmodium knowlesi

by Pain, Arnab, Böhme, Ulrike, Berry, Andrew E., Finn, Robert D., Finn, Robert D., Jackson, Andrew P., Mourier, Tobias, Mistry, Jaina, Pasini, Erica M., Aslett, Martin A., Balasubrammaniam, S., Borgwardt, Karsten M., Brooks, Karen L., Carret, Céline, Carver, Tim J., Cherevach, Inna, Chillingworth, Tracey, Clark, Taane, Galinski, Mary R., Hall, Neil, Harper, David, Harris, David E., Hauser, Heidi, Ivens, Alasdair, Janssen, Christoph S., Keane, Thomas, Larke, Natasha, Lapp, Stacey, Marti, Matthias, Moule, Sharon, Meyer, Irmtraud M., Ormond, Doug, Peters, Nicholas, Sanders, Mandy J., Sanders, Susanne, Sargeant, Tobias J., Simmonds, Mark, Smith, Frances, Squares, Robert, Thurston, Scott, Tivey, Adrian R., Walker, Danielle, White, Brian, Zuiderwijk, Eduard, Churcher, Carol, Quail, Michael A., Cowman, Alan F., Rajandream, Marie A., Kocken, Clemens H. M., Thomas, Alan W., Newbold, Chris, Barrell, Barclay G., Berriman, Matthew
Published 2008

Integrating sequence and structural biology with DAS.

by Prlić, Andreas, Down, Thomas A, Kulesha, Eugene, Finn, Robert D, Kähäri, Andreas, Hubbard, Tim JP
Published 2011

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

by Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I
Published 2018

The Dfam database of repetitive DNA families

by Hubley, Robert, Finn, Robert D., Clements, Jody, Eddy, Sean R., Jones, Thomas A., Bao, Weidong, Smit, Arian F.A., Wheeler, Travis J.
Published 2016

Microbial abundance, activity and population genomic profiling with mOTUs2

by Milanese, Alessio; id_orcid0000-0002-7050-2239, Mende, Daniel R., Paoli, Lucas; id_orcid0000-0003-0771-8309, Salazar Guiral, Guillem; id_orcid0000-0002-9786-1493, Ruscheweyh, Hans-Joachim; id_orcid0000-0001-7473-6086, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I., Coelho, Luis P., Schmidt, Thomas S.B., Almeida, Alexandre, Mitchell, Alex L., Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi; id_orcid0000-0003-3065-0314
Published 2019

The Pfam protein families database: towards a more sustainable future

by Finn, Robert D., Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Mistry, Jaina, Mitchell, Alex L., Potter, Simon C., Punta, Marco, Qureshi, Matloob, Sangrador-Vegas, Amaia, Salazar, Gustavo A., Tate, John, Bateman, Alex
Published 2016

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.

by Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L, Buchan, Daniel WA, Finn, Robert D, Gough, Julian, Jones, David, Kelley, Lawrence A, Paysan-Lafosse, Typhaine, Lam, Su Datt, Murzin, Alexey G, Pandurangan, Arun Prasad, Salazar, Gustavo A, Skwark, Marcin J, Sternberg, Michael JE, Velankar, Sameer, Orengo, Christine
Published 2021

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

by Hufsky, Franziska, Lamkiewicz, Kevin, Almeida, Alexandre, Aouacheria, Abdel, Arighi, Cecilia, Bateman, Alex, Baumbach, Jan, Beerenwinkel, Niko; id_orcid0000-0002-0573-6119, Brandt, Christian, Cacciabue, Marco, Chuguransky, Sara, Drechsel, Oliver, Finn, Robert D., Fritz, Adrian, Fuchs, Stephan, Hattab, Georges, Hauschild, Anne-Christin, Heider, Dominik, Hoffmann, Marie, Hölzer, Martin, Hoops, Stefan, Kaderali, Lars, Kalvari, Ioanna, von Kleist, Max, Kmiecinski, Renó, Kühnert, Denise, Lasso, Gorka, Libin, Pieter, List, Markus, Löchel, Hannah F, Martin, Maria J., Martin, Roman, Matschinske, Julian, McHardy, Alice C., Mendes, Pedro, Mistry, Jaina, Navratil, Vincent, Nawrocki, Eric P, O’Toole, Áine, Ontiveros-Palacios, Nancy, Petrov, Anton I, Rangel-Pineros, Guillermo, Redaschi, Nicole, Reimering, Susanne, Reinert, Knut, Reyes, Alejandro, Richardson, Lorna, Robertson, David L., Sadegh, Sepideh, Singer, Joshua B., Theys, Kristof, Upton, Chris, Welzel, Marius, Williams, Lowri, Marz, Manja
Published 2021

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.

by O'Sullivan, Denise M, Doyle, Ronan M, Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S, Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory CA, Preston, Mark D, Marchesi, Julian R, Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D, Harris, Kathryn A, Kay, Gemma L, O'Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J, Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G, Moran-Gilad, Jacob, Huggett, Jim F
Published 2021

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.

by O'Sullivan, Denise M, Doyle, Ronan M, Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S, Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C A, Preston, Mark D, Marchesi, Julian R, Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D, Harris, Kathryn A, Kay, Gemma L, O'Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J, Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G, Moran-Gilad, Jacob, Huggett, Jim F
Published 2021

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities

by O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob, Huggett, Jim F.
Published 2021