On the fidelity of assembly, binning and gene calling of metagenomes using simulated datasets

by Mavrommatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam, Hugenholtz, Phil, Kyrpides, Nikos C
Published 2006

Use of simulated data sets to evaluate the fidelity of Metagenomic processing methods

by Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerri, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice C., Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam, Lapidus, Alla, Grigoriev, Igor, Richardson, Paul, Hugenholtz, Philip, Kyrpides, Nikos C.
Published 2006

Accurate phylogenetic classification of DNA fragments based on sequence composition

by McHardy, Alice C., Garcia Martin, Hector, Tsirigos, Aristotelis, Hugenholtz, Philip, Rigoutsos, Isidore
Published 2006

Metagenomic analysis of phosphorus removing sludge communities

by Garcia Martin, Hector, Ivanova, Natalia, Kunin, Victor, Warnecke, Falk, Barry, Kerrie, McHardy, Alice C., Yeates, Christine, He, Shaomei, Salamov, Asaf, Szeto, Ernest, Dalin, Eileen, Putnam, Nik, Shapiro, Harris J., Pangilinan, Jasmyn L., Rigoutsos, Isidore, Kyrpides, Nikos C., Blackall, Linda Louise, McMahon, Katherine D., Hugenholtz, Philip
Published 2008

Testing the fidelity of assembly, binning and gene calling in metagenomes

by Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam, Hugenholtz, Phil, Kyrpides, Nikos C.
Published 2006

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

by Read, David F, Cook, Kate, Lu, Yang Y, Le Roch, Karine G, Noble, William Stafford
Published 2019

Small RNA Sequencing across Diverse Biofluids Identifies Optimal Methods for exRNA Isolation.

by Srinivasan, Srimeenakshi, Yeri, Ashish, Cheah, Pike See, Chung, Allen, Danielson, Kirsty, De Hoff, Peter, Filant, Justyna, Laurent, Clara D, Laurent, Lucie D, Magee, Rogan, Moeller, Courtney, Murthy, Venkatesh L, Nejad, Parham, Paul, Anu, Rigoutsos, Isidore, Rodosthenous, Rodosthenis, Shah, Ravi V, Simonson, Bridget, To, Cuong, Wong, David, Yan, Irene K, Zhang, Xuan, Balaj, Leonora, Breakefield, Xandra O, Daaboul, George, Gandhi, Roopali, Lapidus, Jodi, Londin, Eric, Patel, Tushar, Raffai, Robert L, Sood, Anil K, Alexander, Roger P, Das, Saumya, Laurent, Louise C
Published 2019

Multi-focal control of mitochondrial gene expression by oncogenic MYC provides potential therapeutic targets in cancer

by Oran, Amanda R., Adams, Clare M., Zhang, Xiao-yong, Gennaro, Victoria J., Pfeiffer, Harla K., Mellert, Hestia S., Seidel, Hans E., Mascioli, Kirsten, Kaplan, Jordan, Gaballa, Mahmoud R., Shen, Chen, Rigoutsos, Isidore, King, Michael P., Cotney, Justin L., Arnold, Jamie J., Sharma, Suresh D., Martinez, Ubaldo E., Vakoc, Christopher R., Chodosh, Lewis A., Thompson, James E., Bradner, James E., Cameron, Craig E., Shadel, Gerald S., Eischen, Christine M., McMahon, Steven B.
Published 2017

Non-coding genetic variants and microRNAs control gastric cancer immunogenicity

by Miliotis, Christos
Published 2022