Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms

by Luca Ferretti, Paolo Ribeca
Published 2023-09-01

The Site Frequency/Dosage Spectrum of Autopolyploid Populations

by Luca Ferretti, Paolo Ribeca, Sebastian E. Ramos-Onsins
Published 2018-10-01

KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.

by Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
Published 2024-04-01

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data

by Luca Ferretti, Chandana Tennakoon, Adrian Silesian, Graham Freimanis, Paolo Ribeca
Published 2019-07-01

Bovine Derived in vitro Cultures Generate Heterogeneous Populations of Antigen Presenting Cells

by Efrain Guzman, Myriam Pujol, Paolo Ribeca, Maria Montoya, Maria Montoya
Published 2019-03-01

Pervasive Differential Splicing in Marek’s Disease Virus Can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts

by Yashar Sadigh, Abdessamad Tahiri-Alaoui, Stephen Spatz, Venugopal Nair, Paolo Ribeca
Published 2020-03-01

Fast computation and applications of genome mappability.

by Thomas Derrien, Jordi Estellé, Santiago Marco Sola, David G Knowles, Emanuele Raineri, Roderic Guigó, Paolo Ribeca
Published 2012-01-01

Transcriptomic Profiling of Dromedary Camels Immunised with a MERS Vaccine Candidate

by Sharif Hala, Paolo Ribeca, Haya A. Aljami, Suliman A. Alsagaby, Ibrahim Qasim, Sarah C. Gilbert, Naif Khalaf Alharbi
Published 2021-08-01

Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

by David Longbottom, Morag Livingstone, Paolo Ribeca, Delphine Sylvie Anne Beeckman, Arie van der Ende, Yvonne Pannekoek, Daisy Vanrompay
Published 2021-03-01

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations

by David J. King, Graham Freimanis, Lidia Lasecka-Dykes, Amin Asfor, Paolo Ribeca, Ryan Waters, Donald P. King, Emma Laing
Published 2020-10-01

Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.

by Luca Ferretti, Eva Pérez-Martín, Fuquan Zhang, François Maree, Lin-Mari de Klerk-Lorist, Louis van Schalkwykc, Nicholas D Juleff, Bryan Charleston, Paolo Ribeca
Published 2020-10-01

Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.

by Luca Ferretti, Eva Pérez-Martín, Fuquan Zhang, François Maree, Lin-Mari de Klerk-Lorist, Louis van Schalkwykc, Nicholas D Juleff, Bryan Charleston, Paolo Ribeca
Published 2020-01-01

Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015

by Sasan Fereidouni, Graham L. Freimanis, Mukhit Orynbayev, Paolo Ribeca, John Flannery, Donald P. King, Steffen Zuther, Martin Beer, Dirk Höper, Aidyn Kydyrmanov, Kobey Karamendin, Richard Kock
Published 2019-06-01

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome

by Luca Ferretti, Antonello Di Nardo, Benjamin Singer, Lidia Lasecka-Dykes, Grace Logan, Caroline F. Wright, Eva Pérez-Martín, Donald P. King, Tobias J. Tuthill, Paolo Ribeca
Published 2018-04-01

Mutagenesis Mapping of RNA Structures within the Foot-and-Mouth Disease Virus Genome Reveals Functional Elements Localized in the Polymerase (3D ^pol )-Encoding Region

by Lidia Lasecka-Dykes, Fiona Tulloch, Peter Simmonds, Garry A. Luke, Paolo Ribeca, Sarah Gold, Nick J. Knowles, Caroline F. Wright, Jemma Wadsworth, Mehreen Azhar, Donald P. King, Tobias J. Tuthill, Terry Jackson, Martin D. Ryan
Published 2021-08-01

Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa

by Ismar R. Haga, Barbara B. Shih, Gessica Tore, Noemi Polo, Paolo Ribeca, Delgerzul Gombo-Ochir, Gansukh Shura, Tsagaan Tserenchimed, Bazarragchaa Enkhbold, Dulam Purevtseren, Gerelmaa Ulziibat, Batchuluun Damdinjav, Lama Yimer, Fufa D. Bari, Daniel Gizaw, Adeyinka Jeremy Adedeji, Rebecca Bitiyong Atai, Jolly Amoche Adole, Banenat Bajehson Dogonyaro, Pradeep Lakpriya Kumarawadu, Carrie Batten, Amanda Corla, Graham L. Freimanis, Chandana Tennakoon, Andy Law, Samantha Lycett, Tim Downing, Philippa M. Beard
Published 2024-04-01

Evidence for transcript networks composed of chimeric RNAs in human cells.

by Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast, Paolo Ribeca, David Martin, Ryan R Murray, Xinping Yang, Lila Ghamsari, Chenwei Lin, Ian Bell, Erica Dumais, Jorg Drenkow, Michael L Tress, Josep Lluís Gelpí, Modesto Orozco, Alfonso Valencia, Nynke L van Berkum, Bryan R Lajoie, Marc Vidal, John Stamatoyannopoulos, Philippe Batut, Alex Dobin, Jennifer Harrow, Tim Hubbard, Job Dekker, Adam Frankish, Kourosh Salehi-Ashtiani, Alexandre Reymond, Stylianos E Antonarakis, Roderic Guigó, Thomas R Gingeras
Published 2012-01-01