Bondi and beyond. Lessons from three waves of COVID-19 from 2020

by Adam Capon, Vicky Sheppeard, Nicolas Gonzalez |, Jenny Draper, Alice Zhu, Maria Browne, Eleanor Sullivan, Milica Mihajlovic, Rebecca Rockett, Mark J Ferson
Published 2021-09-01

Emergent Omicron BR.2.1 sublineage of SARS-CoV-2 in New South Wales, Australia: a subvariant with high fitness but without increased disease severity

by Annaleise R Howard-Jones, Alicia Arnott, Jenny Draper, Mailie Gall, Sally Ellis, Kelsi Marris, Christine Selvey, Kerri Basile, Dominic E Dwyer, Vitali Sintchenko, Jen Kok
Published 2023-05-01

Identification of Source of Brucella suis Infection in Human by Whole-Genome Sequencing, United States and Tonga

by Christine Quance, Suelee Robbe-Austerman, Tod Stuber, Tom Brignole, Emilio E. DeBess, Laurel Boyd, Brad LeaMaster, Rebekah Tiller, Jenny Draper, Sharon Humphrey, Matthew M. Erdman
Published 2016-01-01

Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis

by Lijuan Luo, Michael Payne, Qinning Wang, Sandeep Kaur, Irani U. Rathnayake, Rikki Graham, Mailie Gall, Jenny Draper, Elena Martinez, Sophie Octavia, Mark M. Tanaka, Amy V. Jennison, Vitali Sintchenko, Ruiting Lan
Published 2023-02-01

Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia

by Alicia Arnott, Jenny Draper, Rebecca J. Rockett, Connie Lam, Rosemarie Sadsad, Mailie Gall, Elena Martinez, Roy Byun, Jennie Musto, Ben Marais, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko
Published 2021-11-01

Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

by Carl J. E. Suster, Carl J. E. Suster, Alicia Arnott, Alicia Arnott, Alicia Arnott, Grace Blackwell, Grace Blackwell, Mailie Gall, Mailie Gall, Jenny Draper, Jenny Draper, Elena Martinez, Elena Martinez, Alexander P. Drew, Alexander P. Drew, Rebecca J. Rockett, Rebecca J. Rockett, Sharon C.-A. Chen, Sharon C.-A. Chen, Sharon C.-A. Chen, Jen Kok, Jen Kok, Jen Kok, Dominic E. Dwyer, Dominic E. Dwyer, Dominic E. Dwyer, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko
Published 2022-10-01

SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes

by Winkie Fong, Rebecca J. Rockett, Jessica E. Agius, Shona Chandra, Jessica Johnson-Mckinnon, Eby Sim, Connie Lam, Alicia Arnott, Mailie Gall, Jenny Draper, Susan Maddocks, Sharon Chen, Jen Kok, Dominic Dwyer, Matthew O’Sullivan, Vitali Sintchenko
Published 2023-05-01

A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs

by Connie Lam, Jessica Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J.E. Suster, Mailie Gall, Jessica Agius, Shona Chandra, Jenny Draper, Elena Martinez, Alexander Drew, Qinning Wang, Sharon C. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko, Rebecca J. Rockett
Published 2023-12-01

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

by Rebecca J. Rockett, Jenny Draper, Mailie Gall, Eby M. Sim, Alicia Arnott, Jessica E. Agius, Jessica Johnson-Mackinnon, Winkie Fong, Elena Martinez, Alexander P. Drew, Clement Lee, Christine Ngo, Marc Ramsperger, Andrew N. Ginn, Qinning Wang, Michael Fennell, Danny Ko, Linda Hueston, Lukas Kairaitis, Edward C. Holmes, Matthew N. O’Sullivan, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko
Published 2022-05-01

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 [version 1; peer review: 2 approved]

by Áine O'Toole, Verity Hill, Oliver G. Pybus, Alexander Watts, Issac I. Bogoch, Kamran Khan, Jane P. Messina, The COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network, Houriiyah Tegally, Richard R. Lessells, Jennifer Giandhari, Sureshnee Pillay, Kefentse Arnold Tumedi, Gape Nyepetsi, Malebogo Kebabonye, Maitshwarelo Matsheka, Madisa Mine, Sima Tokajian, Hamad Hassan, Tamara Salloum, Georgi Merhi, Jad Koweyes, Jemma L. Geoghegan, Joep de Ligt, Xiaoyun Ren, Matthew Storey, Nikki E. Freed, Chitra Pattabiraman, Pramada Prasad, Anita S. Desai, Ravi Vasanthapuram, Thomas F. Schulz, Lars Steinbrück, Tanja Stadler, Swiss Viollier Sequencing Consortium, Antonio Parisi, Angelica Bianco, Darío García de Viedma, Sergio Buenestado-Serrano, Vítor Borges, Joana Isidro, Sílvia Duarte, João Paulo Gomes, Neta S. Zuckerman, Michal Mandelboim, Orna Mor, Torsten Seemann, Alicia Arnott, Jenny Draper, Mailie Gall, William Rawlinson, Ira Deveson, Sanmarié Schlebusch, Jamie McMahon, Lex Leong, Chuan Kok Lim, Maria Chironna, Daniela Loconsole, Antonin Bal, Laurence Josset, Edward Holmes, Kirsten St. George, Erica Lasek-Nesselquist, Reina S. Sikkema, Bas Oude Munnink, Marion Koopmans, Mia Brytting, V. Sudha rani, S. Pavani, Teemu Smura, Albert Heim, Satu Kurkela, Massab Umair, Muhammad Salman, Barbara Bartolini, Martina Rueca, Christian Drosten, Thorsten Wolff, Olin Silander, Dirk Eggink, Chantal Reusken, Harry Vennema, Aekyung Park, Christine Carrington, Nikita Sahadeo, Michael Carr, Gabo Gonzalez, SEARCH Alliance San Diego, National Virus Reference Laboratory, SeqCOVID-Spain, Danish Covid-19 Genome Consortium (DCGC), Communicable Diseases Genomic Network (CDGN), Dutch National SARS-CoV-2 surveillance program, Division of Emerging Infectious Diseases (KDCA), Tulio de Oliveira, Nuno Faria, Andrew Rambaut, Moritz U. G. Kraemer
Published 2021-05-01

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch [version 2; peer review: 3 approved]

by Áine O'Toole, Verity Hill, Oliver G. Pybus, Alexander Watts, Issac I. Bogoch, Kamran Khan, Jane P. Messina, The COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network, Houriiyah Tegally, Richard R. Lessells, Jennifer Giandhari, Sureshnee Pillay, Kefentse Arnold Tumedi, Gape Nyepetsi, Malebogo Kebabonye, Maitshwarelo Matsheka, Madisa Mine, Sima Tokajian, Hamad Hassan, Tamara Salloum, Georgi Merhi, Jad Koweyes, Jemma L. Geoghegan, Joep de Ligt, Xiaoyun Ren, Matthew Storey, Nikki E. Freed, Chitra Pattabiraman, Pramada Prasad, Anita S. Desai, Ravi Vasanthapuram, Thomas F. Schulz, Lars Steinbrück, Tanja Stadler, Swiss Viollier Sequencing Consortium, Antonio Parisi, Angelica Bianco, Darío García de Viedma, Sergio Buenestado-Serrano, Vítor Borges, Joana Isidro, Sílvia Duarte, João Paulo Gomes, Neta S. Zuckerman, Michal Mandelboim, Orna Mor, Torsten Seemann, Alicia Arnott, Jenny Draper, Mailie Gall, William Rawlinson, Ira Deveson, Sanmarié Schlebusch, Jamie McMahon, Lex Leong, Chuan Kok Lim, Maria Chironna, Daniela Loconsole, Antonin Bal, Laurence Josset, Edward Holmes, Kirsten St. George, Erica Lasek-Nesselquist, Reina S. Sikkema, Bas Oude Munnink, Marion Koopmans, Mia Brytting, V. Sudha rani, S. Pavani, Teemu Smura, Albert Heim, Satu Kurkela, Massab Umair, Muhammad Salman, Barbara Bartolini, Martina Rueca, Christian Drosten, Thorsten Wolff, Olin Silander, Dirk Eggink, Chantal Reusken, Harry Vennema, Aekyung Park, Christine Carrington, Nikita Sahadeo, Michael Carr, Gabo Gonzalez, SEARCH Alliance San Diego, National Virus Reference Laboratory, SeqCOVID-Spain, Danish Covid-19 Genome Consortium (DCGC), Communicable Diseases Genomic Network (CDGN), Dutch National SARS-CoV-2 surveillance program, Division of Emerging Infectious Diseases (KDCA), Tulio de Oliveira, Nuno Faria, Andrew Rambaut, Moritz U. G. Kraemer
Published 2021-09-01