Unlocking the efficiency of genomics laboratories with robotic liquid-handling

by Houriiyah Tegally, James Emmanuel San, Jennifer Giandhari, Tulio de Oliveira
Published 2020-10-01

Strong correlation between urine and vaginal swab samples for bacterial vaginosis

by Deshanta Naicker, Veron Ramsuran, Meleshni Naicker, Fazana Dessai, Jennifer Giandhari, Partson Tinarwo, Nathlee Abbai
Published 2021-06-01

Persistent Hepatitis B Viraemia with Polymerase Mutations among HIV/HBV Co-Infected Patients on HBV-Active ART in KwaZulu-Natal, South Africa

by Nokukhanya Msomi, Raveen Parboosing, Eduan Wilkinson, Jennifer Giandhari, Kerusha Govender, Benjamin Chimukangara, Koleka P. Mlisana
Published 2022-04-01

Limited Sequence Variation and Similar Phenotypic Characteristics of HIV-1 Subtype C Gag Variants Derived From the Reservoir and Pre-Therapy Plasma

by Doty Ojwach, Kamini Gounder, Kamini Gounder, Takalani Mulaudzi, Nombali Gumede, Omolara O. Baiyegunhi, Omolara O. Baiyegunhi, Kavidha Reddy, Kavidha Reddy, Jennifer Giandhari, Jennifer Giandhari, Krista L. Dong, Zaza Ndhlovu, Zaza Ndhlovu, Zaza Ndhlovu, Thumbi Ndung’u, Thumbi Ndung’u, Thumbi Ndung’u, Thumbi Ndung’u, Jaclyn K. Mann
Published 2022-07-01

Consequences of rpoB mutations missed by the GenoType MTBDRplus assay in a programmatic setting in South Africa

by Nomonde R. Mvelase, Lindiwe P. Cele, Ravesh Singh, Yeshnee Naidoo, Jennifer Giandhari, Eduan Wilkinson, Tulio de Oliveira, Khine Swe Swe-Han, Koleka P. Mlisana
Published 2023-02-01

Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

by Sureshnee Pillay, James Emmanuel San, Derek Tshiabuila, Yeshnee Naidoo, Yusasha Pillay, Akhil Maharaj, Ugochukwu J. Anyaneji, Eduan Wilkinson, Houriiyah Tegally, Richard J. Lessells, Cheryl Baxter, Tulio de Oliveira, Jennifer Giandhari
Published 2023-01-01

Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq

by Derek Tshiabuila, Jennifer Giandhari, Sureshnee Pillay, Upasana Ramphal, Yajna Ramphal, Arisha Maharaj, Ugochukwu Jacob Anyaneji, Yeshnee Naidoo, Houriiyah Tegally, Emmanuel James San, Eduan Wilkinson, Richard J. Lessells, Tulio de Oliveira
Published 2022-04-01

Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing.

by Sureshnee Pillay, James Emmanuel San, Derek Tshiabuila, Yeshnee Naidoo, Yusasha Pillay, Akhil Maharaj, Ugochukwu J Anyaneji, Eduan Wilkinson, Houriiyah Tegally, Richard J Lessells, Cheryl Baxter, Tulio de Oliveira, Jennifer Giandhari
Published 2023-01-01

Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018

by Nalia Ismael, Eduan Wilkinson, Isabel Mahumane, Hernane Gemusse, Jennifer Giandhari, Adilson Bauhofer, Adolfo Vubil, Pirolita Mambo, Lavanya Singh, Nédio Mabunda, Dulce Bila, Susan Engelbrecht, Eduardo Gudo, Richard Lessells, Túlio de Oliveira
Published 2022-09-01

Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages

by Kathleen Subramoney, Nkhensani Mtileni, Jennifer Giandhari, Yeshnee Naidoo, Yajna Ramphal, Sureshnee Pillay, Upasana Ramphal, Akhil Maharaj, Derek Tshiabuila, Houriiyah Tegally, Eduan Wilkinson, Tulio de Oliveira, Burtram C. Fielding, Florette K. Treurnicht
Published 2023-05-01

Correction: Subramoney et al. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. <i>Viruses</i> 2023, <i>15</i>, 1194

by Kathleen Subramoney, Nkhensani Mtileni, Jennifer Giandhari, Yeshnee Naidoo, Yajna Ramphal, Sureshnee Pillay, Upasana Ramphal, Akhil Maharaj, Derek Tshiabuila, Houriiyah Tegally, Eduan Wilkinson, Tulio de Oliveira, Burtram C. Fielding, Florette K. Treurnicht
Published 2023-07-01

HIV-1 drug resistance in adults and adolescents on protease inhibitor-based antiretroviral therapy in KwaZulu-Natal Province, South Africa

by Benjamin Chimukangara, Richard J. Lessells, Benn Sartorius, Lilishia Gounder, Sontaga Manyana, Melendhran Pillay, Lavanya Singh, Jennifer Giandhari, Kerusha Govender, Reshmi Samuel, Nokukhanya Msomi, Kogieleum Naidoo, Tulio de Oliveira, Pravi Moodley, Raveen Parboosing
Published 2022-06-01

Reduced efficacy of HIV-1 integrase inhibitors in patients with drug resistance mutations in reverse transcriptase

by Mark J. Siedner, Michelle A. Moorhouse, Bryony Simmons, Tulio de Oliveira, Richard Lessells, Jennifer Giandhari, Stephen A. Kemp, Benjamin Chimukangara, Godspower Akpomiemie, Celicia M. Serenata, Willem D. F. Venter, Andrew Hill, Ravindra K. Gupta
Published 2020-12-01

SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022.

by Kathleen Subramoney, Nkhensani Mtileni, Ashlyn Davis, Jennifer Giandhari, Houriiyah Tegally, Eduan Wilkinson, Yeshnee Naidoo, Yajna Ramphal, Sureshnee Pillay, Upasana Ramphal, Andiswa Simane, Bhaveshan Reddy, Bonolo Mashishi, Nonhlanhla Mbenenge, Tulio de Oliveira, Burtram C Fielding, Florette K Treurnicht
Published 2023-01-01

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

by Sureshnee Pillay, Jennifer Giandhari, Houriiyah Tegally, Eduan Wilkinson, Benjamin Chimukangara, Richard Lessells, Yunus Moosa, Stacey Mattison, Inbal Gazy, Maryam Fish, Lavanya Singh, Khulekani Sedwell Khanyile, James Emmanuel San, Vagner Fonseca, Marta Giovanetti, Luiz Carlos Alcantara, Tulio de Oliveira
Published 2020-08-01

Acquired HIV drug resistance and virologic monitoring in a HIV hyper-endemic setting in KwaZulu-Natal Province, South Africa

by Benjamin Chimukangara, Richard J. Lessells, Lavanya Singh, Indra Grigalionyte, Nonhlanhla Yende-Zuma, Rochelle Adams, Halima Dawood, Linda Dlamini, Sibonisile Buthelezi, Sheldon Chetty, Karidia Diallo, Wayne A. Duffus, Mary Mogashoa, Melissa B. Hagen, Jennifer Giandhari, Tulio de Oliveira, Pravi Moodley, Nesri Padayatchi, Kogieleum Naidoo
Published 2021-10-01

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

by Jennifer Giandhari, Sureshnee Pillay, Eduan Wilkinson, Houriiyah Tegally, Ilya Sinayskiy, Maria Schuld, José Lourenço, Benjamin Chimukangara, Richard Lessells, Yunus Moosa, Inbal Gazy, Maryam Fish, Lavanya Singh, Khulekani Sedwell Khanyile, Vagner Fonseca, Marta Giovanetti, Luiz Carlos Junior Alcantara, Francesco Petruccione, Tulio de Oliveira
Published 2021-02-01

Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021

by Nicholas Bbosa, Deogratius Ssemwanga, Hamidah Namagembe, Ronald Kiiza, Jocelyn Kiconco, John Kayiwa, Tom Lutalo, Julius Lutwama, Alfred Ssekagiri, Isaac Ssewanyana, Susan Nabadda, Henry Kyobe-Bbosa, Jennifer Giandhari, Sureshnee Pillay, Upasana Ramphal, Yajna Ramphal, Yeshnee Naidoo, Derek Tshiabuila, Houriiyah Tegally, Emmanuel J. San, Eduan Wilkinson, Tulio de Oliveira, Pontiano Kaleebu
Published 2022-05-01

Slow progression of pediatric HIV associates with early CD8+ T cell PD-1 expression and a stem-like phenotype

by Vinicius Vieira, Nicholas Lim, Alveera Singh, Ellen Leitman, Reena Dsouza, Emily Adland, Maximilian Muenchhoff, Julia Roider, Miguel Marin Lopez, Julieta Carabelli, Jennifer Giandhari, Andreas Groll, Pieter Jooste, Julia G. Prado, Christina Thobakgale, Krista Dong, Photini Kiepiela, Andrew J. Prendergast, Gareth Tudor-Williams, John Frater, Bruce D. Walker, Thumbi Ndung’u, Veron Ramsuran, Alasdair Leslie, Henrik N. Kløverpris, Philip Goulder
Published 2023-02-01

A genomics network established to respond rapidly to public health threats in South Africa

by Nokukhanya Msomi, Koleka Mlisana, Tulio de Oliveira, Nokukhanya Msomi, Koleka Mlisana, Carolyn Willianson, Jinal N. Bhiman, Dominique Goedhals, Susan Engelbrecht, Gert Van Zyl, Wolfgang Preiser, Diana Hardie, Marvin Hsiao, Nicola Mulder, Darren Martin, Alan Christoffels, Denis York, Jennifer Giandhari, Eduan Wilkinson, Sureshnee Pillay, Houriiyah Tegally, San Emmanuel James, Aquilah Kanzi, Richard John Lessells, Tulio de Oliveira
Published 2020-10-01