Publication of the Belle II Software

by Kuhr Thomas, Bianchi Fabizio, De Pietro Giacomo, Jaffe David, Meier Frank, Sevior Martin, Urquijo Philipp
Published 2024-01-01

Antiphon

by Jaffe, David A.
Published 2020

How Did It Get So Late So Soon?

by Jaffe, David A.
Published 2020

Fox Hollow

by Jaffe, David A.
Published 2020

Assisted assembly: how to improve a de novo genome assembly by using related species

by Gnerre, Sante, Lindblad-Toh, Kerstin, Jaffe, David B., Lander, Eric Steven
Published 2010

Assisted assembly: how to improve a de novo genome assembly by using related species

by Gnerre, Sante, Lindblad-Toh, Kerstin, Jaffe, David B., Lander, Eric Steven
Published 2012

Assisted Assembly: How to Improve a De Novo Genome Assembly By Using Related Species

by Gnerre, Sante, Lander, Eric Steven, Lindblad-Toh, Kerstin, Jaffe, David B
Published 2011

Sensitive, Specific Polymorphism Discovery in Bacteria Using Massively Parallel Sequencing

by Nusbaum, Chad, Ohsumi, Toshiro K., Gomez, James, Aquadro, John, Victor, Thomas C., Warren, Robert M., Hung, Deborah, Birren, Bruce W., Lander, Eric, Jaffe, David B.
Published 2009

Assisted assembly: how to improve a de novo genome assembly by using related species

by Gnerre, Sante, Lindblad-Toh, Kerstin, Jaffe, David B., Lander, Eric Steven
Published 2009

A map of human genome variation from population-scale sequencing

by Altshuler, David, Daly, Mark J., Grossman, Sharon Rachel, Jaffe, David B., Korn, Joshua M., Lander, Eric Steven
Published 2012

ALLPATHS 2: Small Genomes Assembled Accurately and with High Continuity from Short Paired Reads

by MacCallum, Iain, Przybylski, Dariusz, Gnerre, Sante, Burton, Joshua, Gnirke, Andreas, Malek, Joel, McKernan, Kevin, Ranade, Swati, Shea, Terrance P, Williams, Louise, Nusbaum, Chad, Jaffe, David B, Shlyakhter, Ilya, Young, Sarah
Published 2010

Comprehensive variation discovery in single human genomes

by Weisenfeld, Neil I., Yin, Shuangye, Sharpe, Ted, Lau, Bayo, Hegarty, Ryan, Holmes, Laurie, Sogoloff, Brian, Tabbaa, Diana, Williams, Louise, Russ, Carsten, Nusbaum, Chad, Lander, Eric S., MacCallum, Iain, Jaffe, David B.
Published 2015

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

by Cibulskis, Kristian, Lawrence, Michael S., Carter, Scott L., Sivachenko, Andrey, Jaffe, David, Sougnez, Carrie, Gabriel, Stacey, Meyerson, Matthew, Lander, Eric S., Getz, Gad
Published 2014

The genomic basis of adaptive evolution in threespine sticklebacks.

by Jones, Felicity C, Grabherr, Manfred G, Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C, White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C, Myers, Richard M, Miller, Craig T, Summers, Brian R, Knecht, Anne K, Brady, Shannon D, Zhang, Haili, Pollen, Alex A, Howes, Timothy, Amemiya, Chris, Broad Institute Genome Sequencing Platform & Whole Genome Assembly Team, Baldwin, Jen, Bloom, Toby, Jaffe, David B, Nicol, Robert, Wilkinson, Jane, Lander, Eric S, Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M
Published 2012

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

by Cibulskis, Kristian, Sivachenko, Andrey, Jaffe, David B., Sougnez, Carrie, Gabriel, Stacey B., Meyerson, Matthew L., Getz, Gad, Lawrence, Michael S., Carter, Scott L., Lander, Eric Steven
Published 2014

Comprehensive variation discovery in single human genomes

by Weisenfeld, Neil I, Yin, Shuangye, Sharpe, Ted, Lau, Bayo, Hegarty, Ryan, Holmes, Laurie, Sogoloff, Brian, Tabbaa, Diana, Williams, Louise, Russ, Carsten, Nusbaum, Chad, MacCallum, Iain, Jaffe, David B., Lander, Eric Steven
Published 2015

Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly

by Love, R. Rebecca, Weisenfeld, Neil I., Jaffe, David B., Besansky, Nora J., Neafsey, Daniel E.
Published 2016

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.

by Kirby, Andrew, Gnirke, Andreas, Jaffe, David B, Barešová, Veronika, Pochet, Nathalie, Blumenstiel, Brendan, Ye, Chun, Aird, Daniel, Stevens, Christine, Robinson, James T, Cabili, Moran N, Gat-Viks, Irit, Kelliher, Edward, Daza, Riza, DeFelice, Matthew, Hůlková, Helena, Sovová, Jana, Vylet'al, Petr, Antignac, Corinne, Guttman, Mitchell, Handsaker, Robert E, Perrin, Danielle, Steelman, Scott, Sigurdsson, Snaevar, Scheinman, Steven J, Sougnez, Carrie, Cibulskis, Kristian, Parkin, Melissa, Green, Todd, Rossin, Elizabeth, Zody, Michael C, Xavier, Ramnik J, Pollak, Martin R, Alper, Seth L, Lindblad-Toh, Kerstin, Gabriel, Stacey, Hart, P Suzanne, Regev, Aviv, Nusbaum, Chad, Kmoch, Stanislav, Bleyer, Anthony J, Lander, Eric S, Daly, Mark J
Published 2013

Integrative analysis of the melanoma transcriptome

by Berger, Michael F., Levin, Joshua Z., Vijayendran, Krishna, Sivachenko, Andrey, Adiconis, Xian, Maguire, Jared, Johnson, Laura A., Robinson, James, Verhaak, Roel G., Sougnez, Carrie, Onofrio, Robert, Ziaugra, Liuda, Cibulskis, Kristian, Laine, Elisabeth, Barretina, Jordi, Winckler, Wendy, Fisher, David E., Getz, Gad, Meyerson, Matthew L., Jaffe, David B., Gabriel, Stacey B., Dummer, Reinhard, Gnirke, Andreas, Nusbaum, Chad, Garraway, Levi A., Lander, Eric Steven
Published 2012