RNA Antisense Purification (RAP) for Mapping RNA Interactions with Chromatin

by Engreitz, Jesse Michael, Lander, Eric Steven, Guttman, Mitchell
Published 2017

Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins

by Guttman, Mitchell, Russell, Pamela, Ingolia, Nicholas T., Weissman, Jonathan S., Lander, Eric S., Lander, Eric Steven
Published 2016

Regulatory non-coding RNAs: everything is possible, but what is important?

by Guo, Jimmy K., Guttman, Mitchell
Published 2022

Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs

by Guttman, Mitchell, Garber, Manuel, Levin, Joshua Z., Donaghey, Julie, Robinson, James, Adiconis, Xian, Fan, Lin, Koziol, Magdalena J., Gnirke, Andreas, Nusbaum, Chad, Rinn, John L., Regev, Aviv, Lander, Eric Steven
Published 2012

lincRNAs act in the circuitry controlling pluripotency and differentiation

by Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric Steven
Published 2012

Integrative Genomics Viewer

by Robinson, James T., Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Getz, Gad, Mesirov, Jill P., Lander, Eric Steven
Published 2012

Chromatin Signature Reveals over a Thousand Highly Conserved Large Non-Coding Rnas in Mammals

by Guttman, Mitchell, Amit, Ido, Garber, Manuel, French, Courtney, Lin, Michael F., Feldser, David M., Huarte, Maite, Zuk, Or, Carey, Bryce W., Cassady, John P., Cabili, Moran N., Jaenisch, Rudolf, Jacks, Tyler E., Hacohen, Nir, Bernstein, Bradley E., Kellis, Manolis, Lander, Eric S., Mikkelsen, Tarjei Sigurd, 1978-
Published 2010

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

by Guttman, Mitchell, Loewer, Sabine, Cabili, Moran N., Loh, Yuin-Han, Thomas, Kelly, Park, In Hyun, Garber, Manuel, Curran, Matthew, Onder, Tamer T., Agarwal, Suneet, Manos, Philip D., Datta, Sumon, Schlaeger, Thorsten M., Daley, George Q., Rinn, John L., Lander, Eric Steven
Published 2012

Identifying novel constrained elements by exploiting biased substitution patterns

by Guttman, Mitchell, Garber, Manuel, Clamp, Michele, Zody, Michael C., Friedman, Nir, Xie, Xiaohui
Published 2012

How non-coding RNAs shape nuclear structure to regulate gene expression

by Guttman, Mitchell
Published 2022

Integrated Spatial Genomics Reveals Global Architecture of Single Nuclei

by Takei, Yodai, Yun, Jina, Zheng, Shiwei, Ollikainen, Noah, Pierson, Nico, White, Jonathan, Shah, Sheel, Thomassie, Julian, Suo, ShengBao, Eng, Chee-Huat Linus, Guttman, Mitchell, Yuan, Guo-Cheng, Cai, Long
Published 2022

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

by Huarte, Maite, Guttman, Mitchell, Feldser, David M., Garber, Manuel, Koziol, Magdalena J., Kenzelmann-Broz, Daniela, Khalil, Ahmad M., Zuk, Or, Amit, Ido, Rabani, Michal, Attardi, Laura D., Regev, Aviv, Rinn, John L., Lander, Eric Steven, Jacks, Tyler E
Published 2015

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

by Presser, Aviva, Guttman, Mitchell, Raj, Arjun, van Oudenaarden, Alexander, Rinn, John L., Lander, Eric S., Regev, Aviv, Bernstein, Bradley E., Thomas, Kelly, Morales, Dianali Rivea, Garber, Manuel, Khalil, Ahmad M., Huarte, Maite
Published 2010

Unbiased reconstruction of a mammalian transcriptional network mediating the differential response to pathogens

by Amit, Ido, Guttman, Mitchell, Leite, Ana Paula, Regev, Aviv, Garber, Manuel, Chevrier, Nicolas, Donner, Yoni, Eisenhaure, Thomas, Grenier, Jennifer K., Li, Weibo, Zuk, Or, Schubert, Lisa A., Birditt, Brian, Shay, Tal, Goren, Alon, Zhang, Xiaolan, Smith, Zachary, Deering, Raquel, McDonald, Rebecca C., Cabili, Moran N., Bernstein, Bradley E., Rinn, John L., Meissner, Alexander, Root, David E., Hacohen, Nir
Published 2014

Development and evaluation of RNA-seq methods

by Levin, Joshua Z., Adiconis, Xian, Yassour, Moran, Thompson, Dawn, Guttman, Mitchell, Berger, Michael F., Fan, Lin, Friedman, Nir, Nusbaum, Chad, Gnirke, Andreas, Regev, Aviv
Published 2012

A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals

by Garber, Manuel, Yosef, Nir, Goren, Alon, Raychowdhury, Raktima, Thielke, Anne, Guttman, Mitchell, Robinson, James, Minie, Brian, Chevrier, Nicolas, Itzhaki, Zohar, Blecher-Gonen, Ronnie, Bornstein, Chamutal, Amann-Zalcenstein, Daniela, Weiner, Assaf, Friedrich, Dennis C., Meldrim, James C., Ram, Oren, Cheng, Christine S., Gnirke, Andreas, Fisher, Sheila, Friedman, Nir, Wong, Bang, Bernstein, Bradley E., Nusbaum, Chad, Hacohen, Nir, Regev, Aviv, Amit, Ido
Published 2014

Identifying novel constrained elements by exploiting biased substitution patterns.

by Garber, Manuel, Guttman, Mitchell, Clamp, Michele, Zody, Michael C, Friedman, Nir, Xie, Xiaohui
Published 2009

The 4D nucleome project

by Dekker, Job, Belmont, Andrew S., Guttman, Mitchell, Leshyk, Victor O., Lis, John T., Lomvardas, Stavros, O’Shea, Clodagh C., Park, Peter J., Ren, Bing, Politz, Joan C. Ritland, Shendure, Jay, Zhong, Sheng, Mirny, Leonid A
Published 2018

Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

by Gifford, Casey A., Ziller, Michael Johannes, Gu, Hongcang, Trapnell, Cole, Donaghey, Julie A, Tsankov, Alexander, Shalek, Alex K., Kelley, David Roy, Shishkin, Alexander A., Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael J., Fostel, Jennifer L., Holmes, Laurie, Meldrim, Jim, Guttman, Mitchell, Epstein, Charles, Park, Hongkun, Kohlbacher, Oliver, Rinn, John L, Gnirke, Andreas, Lander, Eric Steven, Bernstein, Bradley E., Meissner, Alexander
Published 2014

The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome

by Engreitz, Jesse Michael, Pandya-Jones, Amy, McDonel, Patrick, Shishkin, Alexander, Sirokman, Klara, Surka, Christine, Kadri, Sabah, Xing, Jeffrey, Goren, Alon, Plath, Kathrin, Guttman, Mitchell, Lander, Eric Steven
Published 2014