Detecting significant changes in protein abundance

by Kai Kammers, Robert N. Cole, Calvin Tiengwe, Ingo Ruczinski
Published 2015-06-01

Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data

by Athena Chen, Kai Kammers, H Benjamin Larman, Robert B. Scharpf, Ingo Ruczinski
Published 2022-09-01

Using the R Package crlmm for Genotyping and Copy Number Estimation

by Robert B. Scharpf, Rafael A. Irizarry, Matthew E. Ritchie, Benilton Carvalho, Ingo Ruczinski
Published 2011-05-01

Novel bioinformatic methods and machine learning approaches reveal candidate biomarkers of the intensity and timing of past exposure to Plasmodium falciparum.

by Sophie Bérubé, Tamaki Kobayashi, Douglas E Norris, Ingo Ruczinski, William J Moss, Amy Wesolowski, Thomas A Louis
Published 2023-01-01

Tissue-specific impact of FADS cluster variants on FADS1 and FADS2 gene expression.

by Lindsay M Reynolds, Timothy D Howard, Ingo Ruczinski, Kanika Kanchan, Michael C Seeds, Rasika A Mathias, Floyd H Chilton
Published 2018-01-01

Cross-platform Comparison of Two Pancreatic Cancer Phenotypes

by Robert B. Scharpf, Christine A. Iacobuzio-Donahue, Leslie Cope, Ingo Ruczinski, Elizabeth Garrett-Mayer, Sindhu Lakkur, Domenico Campagna, Giovanni Parmigiani
Published 2010-11-01

Cross-platform Comparison of Two Pancreatic Cancer Phenotypes

by Robert B. Scharpf, Christine A. Iacobuzio-Donahue, Leslie Cope, Ingo Ruczinski, Elizabeth Garrett-Mayer, Sindhu Lakkur, Domenico Campagna, Giovanni Parmigiani
Published 2010-01-01

Sensitive detection of chromosomal segments of distinct ancestry in admixed populations.

by Alkes L Price, Arti Tandon, Nick Patterson, Kathleen C Barnes, Nicholas Rafaels, Ingo Ruczinski, Terri H Beaty, Rasika Mathias, David Reich, Simon Myers
Published 2009-06-01

Adaptive evolution of the FADS gene cluster within Africa.

by Rasika A Mathias, Wenqing Fu, Joshua M Akey, Hannah C Ainsworth, Dara G Torgerson, Ingo Ruczinski, Susan Sergeant, Kathleen C Barnes, Floyd H Chilton
Published 2012-01-01

Targeted deep sequencing of the PEAR1 locus for platelet aggregation in European and African American families

by Ali R Keramati, Lisa R Yanek, Kruthika Iyer, Margaret A Taub, Ingo Ruczinski, Diane M Becker, Lewis C Becker, Nauder Faraday, Rasika A Mathias
Published 2019-04-01

Plasma Proteome Biomarkers of Inflammation in School Aged Children in Nepal.

by Sun Eun Lee, Keith P West, Robert N Cole, Kerry J Schulze, Parul Christian, Lee Shu-Fune Wu, James D Yager, John Groopman, Ingo Ruczinski
Published 2015-01-01

The genetics of smoking in individuals with chronic obstructive pulmonary disease

by Ma’en Obeidat, Guohai Zhou, Xuan Li, Nadia N. Hansel, Nicholas Rafaels, Rasika Mathias, Ingo Ruczinski, Terri H. Beaty, Kathleen C. Barnes, Peter D. Paré, Don D. Sin
Published 2018-04-01

Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.

by Debashree Ray, Sowmya Venkataraghavan, Wanying Zhang, Elizabeth J Leslie, Jacqueline B Hetmanski, Seth M Weinberg, Jeffrey C Murray, Mary L Marazita, Ingo Ruczinski, Margaret A Taub, Terri H Beaty
Published 2021-07-01

Hemizygous Deletion on Chromosome 3p26.1 Is Associated with Heavy Smoking among African American Subjects in the COPDGene Study.

by Ferdouse Begum, Ingo Ruczinski, John E Hokanson, Sharon M Lutz, Margaret M Parker, Michael H Cho, Jacqueline B Hetmanski, Robert B Scharpf, James D Crapo, Edwin K Silverman, Terri H Beaty
Published 2016-01-01

Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn

by Anna-Maria Liebhoff, Thiagarajan Venkataraman, William R. Morgenlander, Miso Na, Tomasz Kula, Kathleen Waugh, Charles Morrison, Marian Rewers, Randy Longman, June Round, Stephen Elledge, Ingo Ruczinski, Ben Langmead, H. Benjamin Larman
Published 2024-02-01

Uncovering the DNA methylation landscape in key regulatory regions within the FADS cluster.

by Elaheh Rahbar, Hannah C Ainsworth, Timothy D Howard, Gregory A Hawkins, Ingo Ruczinski, Rasika Mathias, Michael C Seeds, Susan Sergeant, James E Hixson, David M Herrington, Carl D Langefeld, Floyd H Chilton
Published 2017-01-01

Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.

by Dimitrios Avramopoulos, Brad D Pearce, John McGrath, Paula Wolyniec, Ruihua Wang, Nicole Eckart, Alexandros Hatzimanolis, Fernando S Goes, Gerald Nestadt, Jennifer Mulle, Karen Coneely, Myfanwy Hopkins, Ingo Ruczinski, Robert Yolken, Ann E Pulver
Published 2015-01-01

HLA alleles and sustained peanut consumption promote IgG4 responses in subjects protected from peanut allergy

by Kanika Kanchan, Stepan Grinek, Henry T. Bahnson, Ingo Ruczinski, Gautam Shankar, David Larson, George Du Toit, Kathleen C. Barnes, Hugh A. Sampson, Mayte Suarez-Farinas, Gideon Lack, Gerald T. Nepom, Karen Cerosaletti, Rasika A. Mathias
Published 2022-01-01

Integrity of Induced Pluripotent Stem Cell (iPSC) Derived Megakaryocytes as Assessed by Genetic and Transcriptomic Analysis.

by Kai Kammers, Margaret A Taub, Ingo Ruczinski, Joshua Martin, Lisa R Yanek, Alyssa Frazee, Yongxing Gao, Dixie Hoyle, Nauder Faraday, Diane M Becker, Linzhao Cheng, Zack Z Wang, Jeff T Leek, Lewis C Becker, Rasika A Mathias
Published 2017-01-01

Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft

by Wanying Zhang, Sowmya Venkataraghavan, Jacqueline B. Hetmanski, Elizabeth J. Leslie, Mary L. Marazita, Mary L. Marazita, Eleanor Feingold, Seth M. Weinberg, Seth M. Weinberg, Ingo Ruczinski, Margaret A. Taub, Alan F. Scott, Debashree Ray, Terri H. Beaty
Published 2021-04-01