The ability of single genes vs full genomes to resolve time and space in outbreak analysis

by Gytis Dudas, Trevor Bedford
Published 2019-12-01

Are arthropods at the heart of virus evolution?

by Gytis Dudas, Darren J Obbard
Published 2015-03-01

MERS-CoV spillover at the camel-human interface

by Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford
Published 2018-01-01

Correction: MERS-CoV spillover at the camel-human interface

by Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford
Published 2018-04-01

PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes

by Abigail Glascock, Eric Waltari, Gytis Dudas, Joan Wong, Vida Ahyong
Published 2024-01-01

Estimating effective population size changes from preferentially sampled genetic sequences.

by Michael D Karcher, Luiz Max Carvalho, Marc A Suchard, Gytis Dudas, Vladimir N Minin
Published 2020-10-01

Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay

by Joshua Batson, Gytis Dudas, Eric Haas-Stapleton, Amy L Kistler, Lucy M Li, Phoenix Logan, Kalani Ratnasiri, Hanna Retallack
Published 2021-04-01

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

by Simon Dellicour, Guy Baele, Gytis Dudas, Nuno R. Faria, Oliver G. Pybus, Marc A. Suchard, Andrew Rambaut, Philippe Lemey
Published 2018-06-01

Bulk Milk Tank Samples Are Suitable to Assess Circulation of Tick-Borne Encephalitis Virus in High Endemic Areas

by Arnoldas Pautienius, Gytis Dudas, Evelina Simkute, Juozas Grigas, Indre Zakiene, Algimantas Paulauskas, Austeja Armonaite, Dainius Zienius, Evaldas Slyzius, Arunas Stankevicius
Published 2021-09-01

Integrating influenza antigenic dynamics with molecular evolution

by Trevor Bedford, Marc A Suchard, Philippe Lemey, Gytis Dudas, Victoria Gregory, Alan J Hay, John W McCauley, Colin A Russell, Derek J Smith, Andrew Rambaut
Published 2014-02-01

Phylogeographic analysis of dengue virus serotype 1 and cosmopolitan serotype 2 in Africa

by Philippe Selhorst, Sebastian Lequime, Gytis Dudas, Sam Proesmans, Pascal Lutumba, Freddy Katshongo, Kadrie Ramadan, Isabel Micalessi, Steve Ahuka-Mundeke, Veerle Vanlerberghe, Marjan Van Esbroeck, Kevin K. Ariën
Published 2023-08-01

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

by Pinky Langat, Jayna Raghwani, Gytis Dudas, Thomas A Bowden, Stephanie Edwards, Astrid Gall, Trevor Bedford, Andrew Rambaut, Rodney S Daniels, Colin A Russell, Oliver G Pybus, John McCauley, Paul Kellam, Simon J Watson
Published 2017-12-01

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors

by Shannon L.M. Whitmer, Jason T. Ladner, Michael R. Wiley, Ketan Patel, Gytis Dudas, Andrew Rambaut, Foday Sahr, Karla Prieto, Samuel S. Shepard, Ellie Carmody, Barbara Knust, Dhamari Naidoo, Gibrilla Deen, Pierre Formenty, Stuart T. Nichol, Gustavo Palacios, Ute Ströher
Published 2018-01-01

Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations

by Jean-Paul Pirnay, Philippe Selhorst, Samuel L. Hong, Christel Cochez, Barney Potter, Piet Maes, Mauro Petrillo, Gytis Dudas, Vincent Claes, Yolien Van der Beken, Gilbert Verbeken, Julie Degueldre, Simon Dellicour, Lize Cuypers, France T’Sas, Guy Van den Eede, Bruno Verhasselt, Wouter Weuts, Cedric Smets, Jan Mertens, Philippe Geeraerts, Kevin K. Ariën, Emmanuel André, Pierre Neirinckx, Patrick Soentjens, Guy Baele
Published 2021-07-01

Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades

by Raphaëlle Klitting, Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi, Bram Vrancken, Karthik Gangavarapu, Mambu Momoh, John Demby Sandi, Augustine Goba, Foday Alhasan, Donald S. Grant, Sylvanus Okogbenin, Ephraim Ogbaini-Emovo, Robert F. Garry, Allison R. Smither, Mark Zeller, Matthias G. Pauthner, Michelle McGraw, Laura D. Hughes, Sophie Duraffour, Stephan Günther, Marc A. Suchard, Philippe Lemey, Kristian G. Andersen, Simon Dellicour
Published 2022-09-01

The global antigenic diversity of swine influenza A viruses

by Nicola S Lewis, Colin A Russell, Pinky Langat, Tavis K Anderson, Kathryn Berger, Filip Bielejec, David F Burke, Gytis Dudas, Judith M Fonville, Ron AM Fouchier, Paul Kellam, Bjorn F Koel, Philippe Lemey, Tung Nguyen, Bundit Nuansrichy, JS Malik Peiris, Takehiko Saito, Gaelle Simon, Eugene Skepner, Nobuhiro Takemae, ESNIP3 consortium, Richard J Webby, Kristien Van Reeth, Sharon M Brookes, Lars Larsen, Simon J Watson, Ian H Brown, Amy L Vincent
Published 2016-04-01

Antibody escape and global spread of SARS-CoV-2 lineage A.27

by Tamara Kaleta, Lisa Kern, Samuel Leandro Hong, Martin Hölzer, Georg Kochs, Julius Beer, Daniel Schnepf, Martin Schwemmle, Nena Bollen, Philipp Kolb, Magdalena Huber, Svenja Ulferts, Sebastian Weigang, Gytis Dudas, Alice Wittig, Lena Jaki, Abdou Padane, Adamou Lagare, Mounerou Salou, Egon Anderson Ozer, Ndodo Nnaemeka, John Kofi Odoom, Robert Rutayisire, Alia Benkahla, Chantal Akoua-Koffi, Abdoul-Salam Ouedraogo, Etienne Simon-Lorière, Vincent Enouf, Stefan Kröger, Sébastien Calvignac-Spencer, Guy Baele, Marcus Panning, Jonas Fuchs
Published 2022-03-01

Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies

by Nicolas Chazot, Fabien L. Condamine, Gytis Dudas, Carlos Peña, Ullasa Kodandaramaiah, Pável Matos-Maraví, Kwaku Aduse-Poku, Marianne Elias, Andrew D. Warren, David J. Lohman, Carla M. Penz, Phil DeVries, Zdenek F. Fric, Soren Nylin, Chris Müller, Akito Y. Kawahara, Karina L. Silva-Brandão, Gerardo Lamas, Irena Kleckova, Anna Zubek, Elena Ortiz-Acevedo, Roger Vila, Richard I. Vane-Wright, Sean P. Mullen, Chris D. Jiggins, Christopher W. Wheat, Andre V. L. Freitas, Niklas Wahlberg
Published 2021-09-01

Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics

by Alexandra Tsitsiklis, PhD, Christina M Osborne, MD, Jack Kamm, PhD, Kayla Williamson, MS, Katrina Kalantar, PhD, Gytis Dudas, PhD, Saharai Caldera, BA, Amy Lyden, BA, Michelle Tan, BS, Norma Neff, PhD, Victoria Soesanto, BS, J Kirk Harris, PhD, Lilliam Ambroggio, PhD, Aline B Maddux, MD, Todd C Carpenter, MD, Ron W Reeder, PhD, Chris Locandro, MS, Eric A F Simões, ProfMD, Matthew K Leroue, MD, Mark W Hall, ProfMD, Athena F Zuppa, ProfMD, Joseph Carcillo, ProfMD, Kathleen L Meert, ProfMD, Anil Sapru, ProfMD, Murray M Pollack, ProfMD, Patrick S McQuillen, ProfMD, Daniel A Notterman, ProfMD, J Michael Dean, ProfMD, Matt S Zinter, MD, Brandie D Wagner, PhD, Joseph L DeRisi, ProfPhD, Peter M Mourani, ProfMD, Charles R Langelier, MDPhD
Published 2022-04-01

Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions

by Gytis Dudas, Samuel L. Hong, Barney I. Potter, Sébastien Calvignac-Spencer, Frédéric S. Niatou-Singa, Thais B. Tombolomako, Terence Fuh-Neba, Ulrich Vickos, Markus Ulrich, Fabian H. Leendertz, Kamran Khan, Carmen Huber, Alexander Watts, Ingrida Olendraitė, Joost Snijder, Kim N. Wijnant, Alexandre M.J.J. Bonvin, Pascale Martres, Sylvie Behillil, Ahidjo Ayouba, Martin Foudi Maidadi, Dowbiss Meta Djomsi, Celestin Godwe, Christelle Butel, Aistis Šimaitis, Miglė Gabrielaitė, Monika Katėnaitė, Rimvydas Norvilas, Ligita Raugaitė, Giscard Wilfried Koyaweda, Jephté Kaleb Kandou, Rimvydas Jonikas, Inga Nasvytienė, Živilė Žemeckienė, Dovydas Gečys, Kamilė Tamušauskaitė, Milda Norkienė, Emilija Vasiliūnaitė, Danguolė Žiogienė, Albertas Timinskas, Marius Šukys, Mantas Šarauskas, Gediminas Alzbutas, Adrienne Amuri Aziza, Eddy Kinganda Lusamaki, Jean-Claude Makangara Cigolo, Francisca Muyembe Mawete, Emmanuel Lokilo Lofiko, Placide Mbala Kingebeni, Jean-Jacques Muyembe Tamfum, Marie Roseline Darnycka Belizaire, René Ghislain Essomba, Marie Claire Okomo Assoumou, Akenji Blaise Mboringong, Alle Baba Dieng, Dovilė Juozapaitė, Salome Hosch, Justino Obama, Mitoha Ondo’o Ayekaba, Daniel Naumovas, Arnoldas Pautienius, Clotaire Donatien Rafaï, Astra Vitkauskienė, Rasa Ugenskienė, Alma Gedvilaitė, Darius Čereškevičius, Vaiva Lesauskaitė, Lukas Žemaitis, Laimonas Griškevičius, Guy Baele
Published 2021-10-01