Multiple non-collinear TF-map alignments of promoter regions

by Messeguer Xavier, Guigó Roderic, Blanco Enrique
Published 2007-04-01

Structural constraints revealed in consistent nucleosome positions in the genome of <it>S. cerevisiae</it>

by Nikolaou Christoforos, Althammer Sonja, Beato Miguel, Guigó Roderic
Published 2010-11-01

Gene finding in the chicken genome

by Antonarakis Stylianos E, Rogers Jane, Wyss Carine, Shteynberg David D, Huckle Elizabeth J, Parra Genis, Flicek Paul, Camara Francisco, Bye Jacqueline M, Castelo Robert, Reymond Alexandre, Eyras Eduardo, Birney Ewan, Guigo Roderic, Brent Michael R
Published 2005-05-01

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in <i>SCN1A</i>.

by Steward, Charles A, Roovers, Jolien, Suner, Marie-Marthe, Gonzalez, Jose M, Uszczynska-Ratajczak, Barbara, Pervouchine, Dmitri, Fitzgerald, Stephen, Viola, Margarida, Stamberger, Hannah, Hamdan, Fadi F, Ceulemans, Berten, Leroy, Patricia, Nava, Caroline, Lepine, Anne, Tapanari, Electra, Keiller, Don, Abbs, Stephen, Sanchis-Juan, Alba, Grozeva, Detelina, Rogers, Anthony S, Diekhans, Mark, Guigó, Roderic, Petryszak, Robert, Minassian, Berge A, Cavalleri, Gianpiero, Vitsios, Dimitrios, Petrovski, Slavé, Harrow, Jennifer, Flicek, Paul, Lucy Raymond, F, Lench, Nicholas J, Jonghe, Peter De, Mudge, Jonathan M, Weckhuysen, Sarah, Sisodiya, Sanjay M, Frankish, Adam
Published 2020

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

by Chen, Lu, Ge, Bing, Casale, Francesco Paolo, Vasquez, Louella, Kwan, Tony, Garrido-Martin, Diego, Watt, Stephen, Yan, Ying, Kundu, Kousik, Ecker, Simone, Datta, Avik, Richardson, David, Burden, Frances, Mead, Daniel, Mann, Alice L, Maria Fernandez, Jose, Rowlston, Sophia, Wilder, Steven P, Farrow, Samantha, Shao, Xiaojian, Lambourne, John J, Redensek, Adriana, Albers, Cornelis A, Amstislavskiy, Vyacheslav, Ashford, Sofie, Berentsen, Kim, Bomba, Lorenzo, Bourque, Guillaume, Bujold, David, Busche, Stephan, Caron, Maxime, Chen, Shu-Huang, Cheung, Warren, Delaneau, Oliver, Dermitzakis, Emmanouil T, Elding, Heather, Colgiu, Irina, Bagger, Frederik O, Flicek, Paul, Habibi, Ehsan, Iotchkova, Valentina, Janssen-Megens, Eva, Kim, Bowon, Lehrach, Hans, Lowy, Ernesto, Mandoli, Amit, Matarese, Filomena, Maurano, Matthew T, Morris, John A, Pancaldi, Vera, Pourfarzad, Farzin, Rehnstrom, Karola, Rendon, Augusto, Risch, Thomas, Sharifi, Nilofar, Simon, Marie-Michelle, Sultan, Marc, Valencia, Alfonso, Walter, Klaudia, Wang, Shuang-Yin, Frontini, Mattia, Antonarakis, Stylianos E, Clarke, Laura, Yaspo, Marie-Laure, Beck, Stephan, Guigo, Roderic, Rico, Daniel, Martens, Joost HA, Ouwehand, Willem H, Kuijpers, Taco W, Paul, Dirk S, Stunnenberg, Hendrik G, Stegle, Oliver, Downes, Kate, Pastinen, Tomi, Soranzo, Nicole
Published 2019

Improving gene annotation using peptide mass spectrometry

by Tanner, Stephen, Shen, Zhouxin, Ng, Julio, Florea, Liliana, Guigó, Roderic, Briggs, Steven P, Bafna, Vineet
Published 2007

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

by Rispe, Claude, Legeai, Fabrice, Nabity, Paul D, Fernández, Rosa, Arora, Arinder K, Baa-Puyoulet, Patrice, Banfill, Celeste R, Bao, Leticia, Barberà, Miquel, Bouallègue, Maryem, Bretaudeau, Anthony, Brisson, Jennifer A, Calevro, Federica, Capy, Pierre, Catrice, Olivier, Chertemps, Thomas, Couture, Carole, Delière, Laurent, Douglas, Angela E, Dufault-Thompson, Keith, Escuer, Paula, Feng, Honglin, Forneck, Astrid, Gabaldón, Toni, Guigó, Roderic, Hilliou, Frédérique, Hinojosa-Alvarez, Silvia, Hsiao, Yi-Min, Hudaverdian, Sylvie, Jacquin-Joly, Emmanuelle, James, Edward B, Johnston, Spencer, Joubard, Benjamin, Le Goff, Gaëlle, Le Trionnaire, Gaël, Librado, Pablo, Liu, Shanlin, Lombaert, Eric, Lu, Hsiao-Ling, Maïbèche, Martine, Makni, Mohamed, Marcet-Houben, Marina, Martínez-Torres, David, Meslin, Camille, Montagné, Nicolas, Moran, Nancy A, Papura, Daciana, Parisot, Nicolas, Rahbé, Yvan, Lopes, Mélanie Ribeiro, Ripoll-Cladellas, Aida, Robin, Stéphanie, Roques, Céline, Roux, Pascale, Rozas, Julio, Sánchez-Gracia, Alejandro, Sánchez-Herrero, Jose F, Santesmasses, Didac, Scatoni, Iris, Serre, Rémy-Félix, Tang, Ming, Tian, Wenhua, Umina, Paul A, van Munster, Manuella, Vincent-Monégat, Carole, Wemmer, Joshua, Wilson, Alex CC, Zhang, Ying, Zhao, Chaoyang, Zhao, Jing, Zhao, Serena, Zhou, Xin, Delmotte, François, Tagu, Denis
Published 2020

SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans

by Romagné, Frédéric, Santesmasses, Didac, White, Louise, Sarangi, Gaurab K., Mariotti, Marco, Hübler, Ron, Weihmann, Antje, Parra, Genís, Gladyshev, Vadim N., Guigó, Roderic, Castellano, Sergi
Published 2014

Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems

by Mariotti, Marco, Lobanov, Alexei V., Manta, Bruno, Santesmasses, Didac, Bofill, Andreu, Guigó, Roderic, Gabaldón, Toni, Gladyshev, Vadim N.
Published 2016

SECISearch3 and Seblastian: new tools for prediction of SECIS elements and selenoproteins

by Mariotti, Marco, Lobanov, Alexei V., Guigo, Roderic, Gladyshev, Vadim N.
Published 2014

Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes

by Deoras, Ameya N., Rasmussen, Matthew D., Guigó, Roderic, Lin, Michael, Kellis, Manolis
Published 2010

Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

by Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent, Borel, Christelle, Mudge, Jonathan M., Howald, Cédric, Foissac, Sylvain, Ucla, Catherine, Chrast, Jacqueline, Ribeca, Paolo, Murray, Ryan R., Lin, Chenwei, Bell, Ian, Dumais, Erica, Drenkow, Jorg, Tress, Michael L., Gelpí, Josep Lluís, Orozco, Modesto, Valencia, Alfonso, van Berkum, Nynke L., Lajoie, Bryan R., Stamatoyannopoulos, John, Batut, Philippe, Dobin, Alex, Harrow, Jennifer, Hubbard, Tim, Dekker, Job, Frankish, Adam, Salehi-Ashtiani, Kourosh, Reymond, Alexandre, Antonarakis, Stylianos E., Guigó, Roderic, Gingeras, Thomas R., Martin, David, Yang, Xinping, Ghamsari, Lila, Vidal, Marc
Published 2012

Genomic history of the origin and domestication of common bean unveils its closest sister species.

by Rendón-Anaya, Martha, Montero-Vargas, Josaphat M, Saburido-Álvarez, Soledad, Vlasova, Anna, Capella-Gutierrez, Salvador, Ordaz-Ortiz, José Juan, Aguilar, O Mario, Vianello-Brondani, Rosana P, Santalla, Marta, Delaye, Luis, Gabaldón, Toni, Gepts, Paul, Winkler, Robert, Guigó, Roderic, Delgado-Salinas, Alfonso, Herrera-Estrella, Alfredo
Published 2017

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A.

by Steward, Charles A, Roovers, Jolien, Suner, Marie-Marthe, Gonzalez, Jose M, Uszczynska-Ratajczak, Barbara, Pervouchine, Dmitri, Fitzgerald, Stephen, Viola, Margarida, Stamberger, Hannah, Hamdan, Fadi F, Ceulemans, Berten, Leroy, Patricia, Nava, Caroline, Lepine, Anne, Tapanari, Electra, Keiller, Don, Abbs, Stephen, Sanchis-Juan, Alba, Grozeva, Detelina, Rogers, Anthony S, Diekhans, Mark, Guigó, Roderic, Petryszak, Robert, Minassian, Berge A, Cavalleri, Gianpiero, Vitsios, Dimitrios, Petrovski, Slavé, Harrow, Jennifer, Flicek, Paul, Lucy Raymond, F, Lench, Nicholas J, Jonghe, Peter De, Mudge, Jonathan M, Weckhuysen, Sarah, Sisodiya, Sanjay M, Frankish, Adam
Published 2020

Transcriptome and genome sequencing uncovers functional variation in humans

by Lappalainen, Tuuli, Sammeth, Michael, Friedländer, Marc R, ‘t Hoen, Peter AC, Monlong, Jean, Rivas, Manuel A, Gonzàlez-Porta, Mar, Kurbatova, Natalja, Griebel, Thasso, Ferreira, Pedro G, Barann, Matthias, Wieland, Thomas, Greger, Liliana, van Iterson, Maarten, Almlöf, Jonas, Ribeca, Paolo, Pulyakhina, Irina, Esser, Daniela, Giger, Thomas, Tikhonov, Andrew, Sultan, Marc, Bertier, Gabrielle, MacArthur, Daniel G, Lek, Monkol, Lizano, Esther, Buermans, Henk PJ, Padioleau, Ismael, Schwarzmayr, Thomas, Karlberg, Olof, Ongen, Halit, Kilpinen, Helena, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Amstislavskiy, Vyacheslav, Stegle, Oliver, Pirinen, Matti, Montgomery, Stephen B, Donnelly, Peter, McCarthy, Mark I, Flicek, Paul, Strom, Tim M, Lehrach, Hans, Schreiber, Stefan, Sudbrak, Ralf, Carracedo, Ángel, Antonarakis, Stylianos E, Häsler, Robert, Syvänen, Ann-Christine, van Ommen, Gert-Jan, Brazma, Alvis, Meitinger, Thomas, Rosenstiel, Philip, Guigó, Roderic, Gut, Ivo G, Estivill, Xavier, Dermitzakis, Emmanouil T
Published 2014

Comparative Analysis of the Transcriptome across Distant Species

by Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R, Waterston, Robert
Published 2015

Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes

by Mariotti, Marco, Ridge, Perry G., Zhang, Yan, Lobanov, Alexei, Pringle, Thomas H., Guigo, Roderic, Hatfield, Dolph L., Gladyshev, Vadim
Published 2013

GENCODE reference annotation for the human and mouse genomes

by Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul
Published 2022

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A

by Steward, Charles A., Roovers, Jolien, Suner, Marie-Marthe, Gonzalez, Jose M., Uszczynska-Ratajczak, Barbara, Pervouchine, Dmitri, Fitzgerald, Stephen, Viola, Margarida, Stamberger, Hannah, Hamdan, Fadi F., Ceulemans, Berten, Leroy, Patricia, Nava, Caroline, Lepine, Anne, Tapanari, Electra, Keiller, Don, Abbs, Stephen, Sanchis-Juan, Alba, Grozeva, Detelina, Rogers, Anthony S., Diekhans, Mark, Guigó, Roderic, Petryszak, Robert, Minassian, Berge A., Cavalleri, Gianpiero, Vitsios, Dimitrios, Petrovski, Slavé, Harrow, Jennifer, Flicek, Paul, Lucy Raymond, F., Lench, Nicholas J., Jonghe, Peter De, Mudge, Jonathan M., Weckhuysen, Sarah, Sisodiya, Sanjay M., Frankish, Adam
Published 2020

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A

by Steward, Charles A., Roovers, Jolien, Suner, Marie-Marthe, Gonzalez, Jose M., Uszczynska-Ratajczak, Barbara, Pervouchine, Dmitri, Fitzgerald, Stephen, Viola, Margarida, Stamberger, Hannah, Hamdan, Fadi F., Ceulemans, Berten, Leroy, Patricia, Nava, Caroline, Lepine, Anne, Tapanari, Electra, Keiller, Don, Abbs, Stephen, Sanchis-Juan, Alba, Grozeva, Detelina, Rogers, Anthony S., Diekhans, Mark, Guigó, Roderic, Petryszak, Robert, Minassian, Berge A., Cavalleri, Gianpiero, Vitsios, Dimitrios, Petrovski, Slavé, Harrow, Jennifer, Flicek, Paul, Lucy Raymond, F., Lench, Nicholas J., Jonghe, Peter De, Mudge, Jonathan M., Weckhuysen, Sarah, Sisodiya, Sanjay M., Frankish, Adam
Published 2020