Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing <it>C. elegans</it> emb...

by Waterston Robert H, Murray John I, Aydin Zafer, Noble William S
Published 2010-02-01

AceTree: a tool for visual analysis of <it>Caenorhabditis elegans </it>embryogenesis

by Araya Carlos L, Murray John I, Bao Zhirong, Boyle Thomas J, Waterston Robert H
Published 2006-06-01

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

by Reinke Valerie, Sasidharan Rajkumar, Hillier LaDeana W, Habegger Lukas, Sboner Andrea, Rozowsky Joel, Koppstein David, Agarwal Ashish, Waterston Robert H, Gerstein Mark
Published 2010-06-01

Investigating hookworm genomes by comparative analysis of two <it>Ancylostoma </it>species

by Kapulkin Wadim, Stajich Jason E, Xu Jian, Wylie Todd, Dante Mike, Martin John, Hawdon John, Arasu Prema, McCarter James P, Mitreva Makedonka, Clifton Sandra W, Waterston Robert H, Wilson Richard K
Published 2005-04-01

Unlocking the Secrets of the Genome

by Celniker, Susan E., Dillon, Laura A. L., Gerstein, Mark B., Gunsalus, Kristin C., Henikoff, Steven, Karpen, Gary H., Kellis, Manolis, Lai, Eric C., Lieb, Jason D., MacAlpine, David M., Micklem, Gos, Piano, Fabio, Snyder, Michael, Stein, Lincoln, White, Kevin P., Waterston, Robert H.
Published 2012

Poem delivered at the semi-centennial anniversary of the English high school, May 2, 1871.

by Waterston, Robert Cassie, 1812-1893. [from old catalog]
Published 1871

Discourses in memory of Robert Waterston /

by Gannett, Ezra S. (Ezra Stiles), 1801-1871., Heywood, John H. (John Healy), 1818-1902.
Published 1859

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

by Zhong, Mei, Niu, Wei, Lu, Zhi John, Sarov, Mihail, Janette, Judith, Raha, Debasish, Sheaffer, Karyn L., Lam, Hugo Y. K., Preston, Elicia, Slightham, Cindie, Hillier, LaDeana W., Agarwal, Ashish, Auerbach, Raymond, Hyman, Anthony A., Gerstein, Mark, Kim, Stuart K., Waterston, Robert H., Reinke, Valerie, Snyder, Michael, Murray, John I., Mango, Susan, Brock, Trisha Jane
Published 2010

Comparative analysis of regulatory information and circuits across distant species.

by Boyle, Alan P, Araya, Carlos L, Brdlik, Cathleen, Cayting, Philip, Cheng, Chao, Cheng, Yong, Gardner, Kathryn, Hillier, LaDeana W, Janette, Judith, Jiang, Lixia, Kasper, Dionna, Kawli, Trupti, Kheradpour, Pouya, Kundaje, Anshul, Li, Jingyi Jessica, Ma, Lijia, Niu, Wei, Rehm, E Jay, Rozowsky, Joel, Slattery, Matthew, Spokony, Rebecca, Terrell, Robert, Vafeados, Dionne, Wang, Daifeng, Weisdepp, Peter, Wu, Yi-Chieh, Xie, Dan, Yan, Koon-Kiu, Feingold, Elise A, Good, Peter J, Pazin, Michael J, Huang, Haiyan, Bickel, Peter J, Brenner, Steven E, Reinke, Valerie, Waterston, Robert H, Gerstein, Mark, White, Kevin P, Kellis, Manolis, Snyder, Michael
Published 2014

Comparative Analysis of the Transcriptome across Distant Species

by Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R, Waterston, Robert
Published 2015

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.

by Kudron, Michelle M, Victorsen, Alec, Gevirtzman, Louis, Hillier, LaDeana W, Fisher, William W, Vafeados, Dionne, Kirkey, Matt, Hammonds, Ann S, Gersch, Jeffery, Ammouri, Haneen, Wall, Martha L, Moran, Jennifer, Steffen, David, Szynkarek, Matt, Seabrook-Sturgis, Samantha, Jameel, Nader, Kadaba, Madhura, Patton, Jaeda, Terrell, Robert, Corson, Mitch, Durham, Timothy J, Park, Soo, Samanta, Swapna, Han, Mei, Xu, Jinrui, Yan, Koon-Kiu, Celniker, Susan E, White, Kevin P, Ma, Lijia, Gerstein, Mark, Reinke, Valerie, Waterston, Robert H
Published 2018

Packer et al 2019 scRNAseq dataset wrangled into standard WormBase anndata- 89k cells profiled with 10xv2 across multiple timepoints of development

by da Veiga Beltrame, Eduardo
Published 2021

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

by Stein, Lincoln D, Bao, Zhirong, Blasiar, Darin, Blumenthal, Thomas, Brent, Michael R, Chen, Nansheng, Chinwalla, Asif, Clarke, Laura, Clee, Chris, Coghlan, Avril, Coulson, Alan, D'Eustachio, Peter, Fitch, David HA, Fulton, Lucinda A, Fulton, Robert E, Griffiths-Jones, Sam, Harris, Todd W, Hillier, LaDeana W, Kamath, Ravi, Kuwabara, Patricia E, Mardis, Elaine R, Marra, Marco A, Miner, Tracie L, Minx, Patrick, Mullikin, James C, Plumb, Robert W, Rogers, Jane, Schein, Jacqueline E, Sohrmann, Marc, Spieth, John, Stajich, Jason E, Wei, C, Willey, David, Wilson, Richard K, Durbin, Richard, Waterston, Robert H
Published 2003

Comparative Analysis of the Transcriptome Across Distant Species

by Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A., Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak, Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter, Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R., Waterston, Robert
Published 2022