scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data

by Nelson Johansen, Gerald Quon
Published 2019-08-01

scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data

by Ruoxin Li, Gerald Quon
Published 2019-09-01

Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data

by Ruoxin Li, Gerald Quon
Published 2019-11-01

Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection

by Nelson Johansen, Hongru Hu, Gerald Quon
Published 2023-08-01

siVAE: interpretable deep generative models for single-cell transcriptomes

by Yongin Choi, Ruoxin Li, Gerald Quon
Published 2023-02-01

Microbiome-based classification models for fresh produce safety and quality evaluation

by Chao Liao, Luxin Wang, Gerald Quon
Published 2024-04-01

Single-Cell RNA-Seq Analysis Reveals Lung Epithelial Cell Type-Specific Responses to HDM and Regulation by Tet1

by Tao Zhu, Anthony P. Brown, Lucy P. Cai, Gerald Quon, Hong Ji
Published 2022-05-01

PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions.

by Wenlian Qiao, Gerald Quon, Elizabeth Csaszar, Mei Yu, Quaid Morris, Peter W Zandstra
Published 2012-01-01

Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis.

by Ang Cui, Gerald Quon, Alan M Rosenberg, Rae S M Yeung, Quaid Morris, BBOP Study Consortium
Published 2016-01-01

Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research

by Colin Kern, Ying Wang, Xiaoqin Xu, Zhangyuan Pan, Michelle Halstead, Ganrea Chanthavixay, Perot Saelao, Susan Waters, Ruidong Xiang, Amanda Chamberlain, Ian Korf, Mary E. Delany, Hans H. Cheng, Juan F. Medrano, Alison L. Van Eenennaam, Chris K. Tuggle, Catherine Ernst, Paul Flicek, Gerald Quon, Pablo Ross, Huaijun Zhou
Published 2021-03-01

The benefits of selecting phenotype-specific variants for applications of mixed models in genomics

by Lippert, Christoph, Quon, Gerald, Kang, Eun Yong, Kadie, Carl M., Listgarten, Jennifer, Heckerman, David
Published 2014

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

by Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis
Published 2015

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles

by Anghel, Catalina V., Quon, Gerald, Haider, Syed, Nguyen, Francis, Deshwar, Amit G., Morris, Quaid D., Boutros, Paul C.
Published 2015

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

by Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis
Published 2016

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans

by Claussnitzer, Melina, Dankel, Simon N., Kim, Kyoung-Han, Quon, Gerald, Meuleman, Wouter, Haugen, Christine, Glunk, Viktoria, Sousa, Isabel S., Beaudry, Jacqueline L., Puviindran, Vijitha, Liu, Jannel, Svensson, Per-Arne, Hsu, Yi-Hsiang, Drucker, Daniel J., Mellgren, Gunnar, Hui, Chi-Chung, Hauner, Hans, Kellis, Manolis, Abdennur, Nezar Alexander
Published 2016