Knockout of IRF7 Highlights its Modulator Function of Host Response Against Avian Influenza Virus and the Involvement of MAPK and TOR Signaling Pathways in Chicken

by Tae Hyun Kim, Colin Kern, Huaijun Zhou
Published 2020-04-01

Integrated Transcriptome and Histone Modification Analysis Reveals NDV Infection Under Heat Stress Affects Bursa Development and Proliferation in Susceptible Chicken Line

by Ganrea Chanthavixay, Colin Kern, Ying Wang, Perot Saelao, Susan J. Lamont, Rodrigo A. Gallardo, Gonzalo Rincon, Huaijun Zhou
Published 2020-09-01

Molecular Biology and Pathological Process of an Infectious Bronchitis Virus with Enteric Tropism in Commercial Broilers

by Ana P. da Silva, Ruediger Hauck, Sabrina R. C. Nociti, Colin Kern, H. L. Shivaprasad, Huaijun Zhou, Rodrigo A. Gallardo
Published 2021-07-01

Liver Transcriptome Responses to Heat Stress and Newcastle Disease Virus Infection in Genetically Distinct Chicken Inbred Lines

by Ying Wang, Perot Saelao, Colin Kern, Sihua Jin, Rodrigo A. Gallardo, Terra Kelly, Jack M. Dekkers, Susan J. Lamont, Huaijun Zhou
Published 2020-09-01

Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

by Colin Kern, Ying Wang, James Chitwood, Ian Korf, Mary Delany, Hans Cheng, Juan F. Medrano, Alison L. Van Eenennaam, Catherine Ernst, Pablo Ross, Huaijun Zhou
Published 2018-09-01

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

by Michelle M. Halstead, Colin Kern, Perot Saelao, Ying Wang, Ganrea Chanthavixay, Juan F. Medrano, Alison L. Van Eenennaam, Ian Korf, Christopher K. Tuggle, Catherine W. Ernst, Huaijun Zhou, Pablo J. Ross
Published 2020-10-01

Bento: a toolkit for subcellular analysis of spatial transcriptomics data

by Clarence K. Mah, Noorsher Ahmed, Nicole A. Lopez, Dylan C. Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J. Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W. Yeo
Published 2024-04-01

Primary Chicken and Duck Endothelial Cells Display a Differential Response to Infection with Highly Pathogenic Avian Influenza Virus

by Zhen Wei Marcus Tong, Anjana C. Karawita, Colin Kern, Huaijun Zhou, Jane E. Sinclair, Limin Yan, Keng Yih Chew, Sue Lowther, Lee Trinidad, Arjun Challagulla, Karel A. Schat, Michelle L. Baker, Kirsty R. Short
Published 2021-06-01

Pig genome functional annotation enhances the biological interpretation of complex traits and human disease

by Zhangyuan Pan, Yuelin Yao, Hongwei Yin, Zexi Cai, Ying Wang, Lijing Bai, Colin Kern, Michelle Halstead, Ganrea Chanthavixay, Nares Trakooljul, Klaus Wimmers, Goutam Sahana, Guosheng Su, Mogens Sandø Lund, Merete Fredholm, Peter Karlskov-Mortensen, Catherine W. Ernst, Pablo Ross, Christopher K. Tuggle, Lingzhao Fang, Huaijun Zhou
Published 2021-10-01

Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research

by Colin Kern, Ying Wang, Xiaoqin Xu, Zhangyuan Pan, Michelle Halstead, Ganrea Chanthavixay, Perot Saelao, Susan Waters, Ruidong Xiang, Amanda Chamberlain, Ian Korf, Mary E. Delany, Hans H. Cheng, Juan F. Medrano, Alison L. Van Eenennaam, Chris K. Tuggle, Catherine Ernst, Paul Flicek, Gerald Quon, Pablo Ross, Huaijun Zhou
Published 2021-03-01