Evaluation of the role of location and distance in recruitment in respondent-driven sampling

by Hayes Richard J, Seeley Janet, Sonnenberg Pam, Copas Andrew, Johnston Lisa G, McCreesh Nicky, Frost Simon DW, White Richard G
Published 2011-10-01

Assigning and visualizing germline genes in antibody repertoires

by Frost, Simon, Murrell, Ben, Hossain, Mukarran, Silverman, Gregg, Pond, Sergei
Published 2015

#JASPER the Economics cat

by Trowell, Clare, And Frost, Simon
Published 2018

Surveys, Serologies, and Sequences Reveal History of Iatrogenic Transmission of HIV-1.

by Frost, Simon DW, Kwofie, Samuel K
Published 2016

Understanding drivers of phylogenetic clustering in molecular epidemiological studies of HIV.

by Frost, Simon DW, Pillay, Deenan
Published 2015

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS.

by Tonkin-Hill, Gerry, Lees, John A, Bentley, Stephen D, Frost, Simon DW, Corander, Jukka
Published 2019

Lessons from the pandemic: Responding to emerging zoonotic viral diseases — a Keystone Symposia report

by Cable, Jennifer, Fauci, Anthony, Dowling, William E., Günther, Stephan, Bente, Dennis A., Yadav, Pragya Dhruv, Madoff, Lawrence C., Wang, Lin-Fa, Arora, Rahul K., Van Kerkhove, Maria, Chu, May C., Jaenisch, Thomas, Epstein, Jonathan H., Frost, Simon David William, Bausch, Daniel G., Hensley, Lisa E., Bergeron, Éric, Sitaras, Ioannis, Gunn, Michael D., Geisbert, Thomas W., Muñoz-Fontela, César, Krammer, Florian, de Wit, Emmie, Nordenfelt, Pontus, Saphire, Erica Ollmann, Gilbert, Sarah C., Corbett, Kizzmekia S., Branco, Luis M., Baize, Sylvain, van Doremalen, Neeltje, Krieger, Marco A., Costa Clemens, Sue Ann, Hesselink, Renske, Hartman, Dan
Published 2022

Producing polished prokaryotic pangenomes with the Panaroo pipeline

by Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Published 2021

Producing polished prokaryotic pangenomes with the Panaroo pipeline

by Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Published 2020

Producing polished prokaryotic pangenomes with the Panaroo pipeline.

by Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A, Gladstone, Rebecca A, Lo, Stephanie, Beaudoin, Christopher, Floto, R Andres, Frost, Simon DW, Corander, Jukka, Bentley, Stephen D, Parkhill, Julian
Published 2020

Eight challenges in phylodynamic inference

by Frost, Simon D.W., Pybus, Oliver G., Gog, Julia R., Viboud, Cecile, Bonhoeffer, Sebastian; id_orcid0000-0001-8052-3925, Bedford, Trevor
Published 2015

Fast hierarchical Bayesian analysis of population structure.

by Tonkin-Hill, Gerry, Lees, John A, Bentley, Stephen D, Frost, Simon DW, Corander, Jukka
Published 2019

OutbreakTools: a new platform for disease outbreak analysis using the R software.

by Jombart, Thibaut, Aanensen, David M, Baguelin, Marc, Birrell, Paul, Cauchemez, Simon, Camacho, Anton, Colijn, Caroline, Collins, Caitlin, Cori, Anne, Didelot, Xavier, Fraser, Christophe, Frost, Simon, Hens, Niel, Hugues, Joseph, Höhle, Michael, Opatowski, Lulla, Rambaut, Andrew, Ratmann, Oliver, Soubeyrand, Samuel, Suchard, Marc A, Wallinga, Jacco, Ypma, Rolf, Ferguson, Neil
Published 2018

Biased phylodynamic inferences from analysing clusters of viral sequences.

by Dearlove, Bethany L, Xiang, Fei, Frost, Simon DW
Published 2017

Modeling infectious disease dynamics in the complex landscape of global health.

by Heesterbeek, Hans, Anderson, Roy M, Andreasen, Viggo, Bansal, Shweta, De Angelis, Daniela, Dye, Chris, Eames, Ken TD, Edmunds, W John, Frost, Simon DW, Funk, Sebastian, Hollingsworth, T Deirdre, House, Thomas, Isham, Valerie, Klepac, Petra, Lessler, Justin, Lloyd-Smith, James O, Metcalf, C Jessica E, Mollison, Denis, Pellis, Lorenzo, Pulliam, Juliet RC, Roberts, Mick G, Viboud, Cecile, Isaac Newton Institute IDD Collaboration
Published 2018

Assessing Commitment and Reporting Fidelity to a Text Message-Based Participatory Surveillance in Rural Western Uganda.

by Lester, James, Paige, Sarah, Chapman, Colin A, Gibson, Mhairi, Holland Jones, James, Switzer, William M, Ting, Nelson, Goldberg, Tony L, Frost, Simon DW
Published 2016

Measuring Asymmetry in Time-Stamped Phylogenies.

by Dearlove, Bethany L, Frost, Simon DW
Published 2015

The role of venues in structuring HIV, sexually transmitted infections, and risk networks among men who have sex with men.

by Drumright, Lydia N, Weir, Sharon S, Frost, Simon DW
Published 2018

An investig-ation into the epidemiology of chikungunya virus across neglected regions of Indonesia

by Stubbs, Samuel C. B., Johar, Edison, Yudhaputri, Frilasita A., Yohan, Benediktus, Santoso, Marsha S., Hayati, Rahma F., Denis, Dionisius, Blacklaws, Barbara A., Powers, Ann M., Sasmono, R. Tedjo, Myint, Khin Saw Aye, Frost, Simon D. W.
Published 2021

Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir.

by Wampande, Eddie M, Waiswa, Peter, Allen, David J, Hewson, Roger, Frost, Simon DW, Stubbs, Samuel CB
Published 2021