Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis

by Guislaine Refrégier, Christophe Sola, Christophe Guyeux
Published 2020-11-01

CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA.

by Christophe Guyeux, Christophe Sola, Camille Noûs, Guislaine Refrégier
Published 2021-03-01

Investigating the Diversity of Tuberculosis Spoligotypes with Dimensionality Reduction and Graph Theory

by Gaetan Senelle, Christophe Guyeux, Guislaine Refrégier, Christophe Sola
Published 2022-12-01

Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar.

by Rondroarivelo Rasoahanitralisoa, Niaina Rakotosamimanana, David Stucki, Christophe Sola, Sebastien Gagneux, Voahangy Rasolofo Razanamparany
Published 2017-01-01

Spoligotype Database of Mycobacterium tuberculosis: Biogeographic Distribution of Shared Types and Epidemiologic and Phylogenetic Perspectives

by Christophe Sola, Ingrid Filliol, Maria Cristina Gutierrez, Igor Mokrousov, Véronique Vincent, Nalin Rastogi
Published 2001-06-01

Tuberculosis in the Caribbean: Using Spacer Oligonucleotide Typing to Understand Strain Origin and Transmission

by Christophe Sola, Anne Devallois, Lionel Horgen, Jérôme Maïsetti, Ingrid Filliol, Eric Legrand, Nalin Rastogi
Published 1999-06-01

Spoligotyping of Mycobacterium africanum, Burkina Faso

by Michel K. Gomgnimbou, Guislaine Refrégier, Serge Diagbouga, Sanou Adama, Antoinette Kaboré, Adama Ouiminga, Christophe Sola
Published 2012-01-01

Mycobacterium tuberculosis spoligotypes and drug-resistant characterization from Beira compared to genotypes circulating in Mozambique

by Lívia Maria Pala Anselmo, Emilyn Costa Conceição, Evangelina Namburete, Cinara Feliciano, Silvana Spindola, Christophe Sola, Valdes Roberto Bollela
Published 2019-11-01

Mycobacterium tuberculosis complex drug-resistance, phylogenetics, and evolution in Nigeria: Comparison with Ghana and Cameroon.

by Muhammed Rabiu Sahal, Gaetan Senelle, Kevin La, Tukur Wada Panda, Dalha Wada Taura, Christophe Guyeux, Emmanuelle Cambau, Christophe Sola
Published 2023-10-01

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

by Jérôme Azé, Christophe Sola, Jian Zhang, Florian Lafosse-Marin, Memona Yasmin, Rubina Siddiqui, Kristin Kremer, Dick van Soolingen, Guislaine Refrégier
Published 2015-01-01

Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data

by Gary Napier, David Couvin, Guislaine Refrégier, Christophe Guyeux, Conor J. Meehan, Christophe Sola, Susana Campino, Jody Phelan, Taane G. Clark
Published 2023-07-01

Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping

by Noël Harijaona Ratovonirina, Niaina Rakotosamimanana, Solohery Lalaina Razafimahatratra, Mamy Serge Raherison, Guislaine Refrégier, Christophe Sola, Fanjasoa Rakotomanana, Voahangy Rasolofo Razanamparany
Published 2017-08-01

Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis.

by Tiago Dos Vultos, Olga Mestre, Jean Rauzier, Marcin Golec, Nalin Rastogi, Voahangy Rasolofo, Tone Tonjum, Christophe Sola, Ivan Matic, Brigitte Gicquel
Published 2008-01-01

Prediction of the hidden genotype of mixed infection strains in Iranian tuberculosis patients

by Mansour Kargarpour Kamakoli, Ghazaleh Farmanfarmaei, Morteza Masoumi, Sharareh Khanipour, Safoora Gharibzadeh, Christophe Sola, Abolfazl Fateh, Seyed Davar Siadat, Guislaine Refregier, Farzam Vaziri
Published 2020-06-01

Beijing Lineage of MDR Mycobacterium tuberculosis in Bulgaria, 2007–2011

by Stefan Panaiotov, Elizabeta Bachiyska, Stanislava Yordanova, Yuliana Atanasova, Nadia Brankova, Viktoria Levterova, Sarah Sengstake, Richard M. Anthony, Indra Bergval, Christophe Sola, Todor Kantardjiev
Published 2014-11-01

Newly Identified Mycobacterium africanum Lineage 10, Central Africa

by Christophe Guyeux, Gaetan Senelle, Adrien Le Meur, Philip Supply, Cyril Gaudin, Jody E. Phelan, Taane G Clark, Leen Rigouts, Bouke de Jong, Christophe Sola, Guislaine Refrégier
Published 2024-03-01

Predominant Tuberculosis Spoligotypes, Delhi, India

by Urvashi Balbir Singh, Naga Suresh, N.Vijaya Bhanu, Jyoti Arora, Hema Pant, Sanjeev Sinha, Ram Charan Aggarwal, Sushma Singh, Jitendra Nath Pande, Christophe Sola, Nalin Rastogi, Pradeep Seth
Published 2004-06-01

Mycobacterium tuberculosis complex genotypes circulating in Nigeria based on spoligotyping obtained from Ziehl-Neelsen stained slides extracted DNA.

by Barbara Molina-Moya, Michel K Gomgnimbou, Lizania Spinasse, Joshua Obasanya, Olanrewaju Oladimeji, Russell Dacombe, Thomas Edwards, Xavier-Olessa Daragon, Lovett Lawson, Saddiq T Abdurrahman, Luis E Cuevas, Jose Dominguez, Christophe Sola
Published 2018-02-01

A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria.

by Lovett Lawson, Jian Zhang, Michel K Gomgnimbou, Saddiq T Abdurrahman, Stéphanie Le Moullec, Fatima Mohamed, Gertrude N Uzoewulu, Olumide M Sogaolu, Khye Seng Goh, Nnamdi Emenyonu, Guislaine Refrégier, Luis E Cuevas, Christophe Sola
Published 2012-01-01

Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil

by Nayanne Gama Teixeira Dantas, Phillip Noel Suffys, Wânia da Silva Carvalho, Harrison Magdinier Gomes, Isabela Neves de Almeida, Lida Jouca de Assis Figueiredo, Alan Douglas Gonçalves, Michel Kireopori Gomgnimbou, Guislaine Refregier, Christophe Sola, Silvana Spíndola de Miranda