Solvation free energies of nucleic acid bases in ionic liquids

Jumbri, K. and Micaelo, N.M. and Abdul Rahman, M.B. (2017) Solvation free energies of nucleic acid bases in ionic liquids. Molecular Simulation, 43 (1). pp. 19-27. ISSN 08927022

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Abstract

The solvation free energies of five nucleic acid bases in CnbimBr (where n = 2, 4, 6) ionic liquids (ILs) were computed using the Bennett acceptance ratio (BAR) method employing molecular dynamics simulations. The computed free energies using BAR were in agreement with other methods. The large and negative predicted free energies of the bases in ILs indicated that the bases were better solvated in the ILs rather than in water. Hydrogen bonding interactions between polar sites of the bases and ILs� ions significantly contributed to the solvation mechanism. © 2016 Informa UK Limited, trading as Taylor & Francis Group.

Item Type: Article
Additional Information: cited By 12
Uncontrolled Keywords: Bioinformatics; Biomolecules; Hydrogen bonds; Ionic liquids; Molecular dynamics; Nucleic acids; Solvation, Bennett acceptance ratio; Hydrogen bonding interactions; Ionic liquid (ils); Molecular dynamics simulations; Nucleic acid basis; Polar sites; Solvation free energies; Solvation mechanism, Free energy
Depositing User: Mr Ahmad Suhairi UTP
Date Deposited: 09 Nov 2023 16:20
Last Modified: 09 Nov 2023 16:20
URI: https://khub.utp.edu.my/scholars/id/eprint/8998

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