Docking studies and molecular dynamics simulation of ipomoea batatas L. leaves compounds as lipoxygenase (LOX) inhibitor

Yeni, Y. and Supandi, S. and Dwita, L.P. and Suswandari, S. and Shaharun, M.S. and Sambudi, N.S. (2020) Docking studies and molecular dynamics simulation of ipomoea batatas L. leaves compounds as lipoxygenase (LOX) inhibitor. Journal of Pharmacy and Bioallied Sciences, 12 (6). S836-S840. ISSN 09757406

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Abstract

Background: Inflammatory mediators produced by cyclooxygenase (COX) and lipoxygenase (LOX) pathways are responsible for many human diseases, such as cancer, arthritis, and neurological disorders. Flavonoid-containing plants, such as Ipomoea batatas leaves, have shown potential anti-inflammatory activity. Objectives: This study aimed to predict the actions of 10 compounds in I. batatas leaves, which are YGM�0a cyanidin 3�0�sophoroside�5�0�glucosede, YGM�0f cyanidin 3�O�(2�0�(6�0�(E)�p�coumaroyl�β�D�g l u c o p y r a n o s y l) � β � D � g l u c o p y r a n o s i d e) � 5 � 0 � β � D � g l u c o p y r a n o s i d e , YGM�1a cyanidin 3�(6,6��caffeylp�hydroxybenzoylsophoroside) �5�glucoside, YGM�1b cyanidin 3�(6,6��dicaffeylsophor-oside)�5�glucoside, YGM�2 cyanidin 3�(6�caffeylsophoroside)�5�glucoside, YGM�3 cyanidin 3�(6,6��caffeyl-ferulylsophoroside)�5�glucoside, YGM�4b peonidin 3�(6,6��dicaffeylsophoroside)�5� glucoside, YGM�5a peonidin 3�(6,6��caffeylphydroxybenzo-ylsophoroside)�5�gluco-side, YGM�5b cyanidin 3�6�caffeylsophoroside)�5�glucosede, and YGM�6 peonidin 3�(6,6��caffeylferulylsophoroside)�5�glucoside as LOX inhibitors, and also predict the stability of ligand�LOX complex. Materials and Methods: The compounds were screened through docking studies using PLANTS. Also, the molecular dynamics simulation was conducted using GROMACS at 310 K. Results: The results showed that the most significant binding affinity toward LOX was shown by YGM�0a and YGM�0a, and the LOX complex in molecular dynamics simulation showed stability for 20 ns. Conclusion: Based on Docking Studies and Molecular Dynamics Simulation of I. Batatas Leaves compounds, YGM-0a was shown to be the most probable LOX inhibitor. © 2020 Wolters Kluwer Medknow Publications. All rights reserved.

Item Type: Article
Additional Information: cited By 3
Uncontrolled Keywords: arachidonate 5 lipoxygenase; cyanidin 3 (6 caffeylsophoroside) 5 glucosede; cyanidin 3 (6 caffeylsophoroside) 5 glucoside; cyanidin 3 (6,6' caffeyl ferulylsophoroside) 5 glucoside; cyanidin 3 (6,6' caffeylp hydroxybenzoylsophoroside) 5 glucoside; cyanidin 3 (6,6' dicaffeylsophor oside) 5 glucoside; cyanidin 3 o sophoroside 5 o glucosede; cyanidin 3 o 2 o (6 o 4 coumaroyl beta dextro glucopyranosyl) beta dextro glucopyranoside 5 o beta dextro glucopyranoside; glycine; lipoxygenase inhibitor; peonidin 3 (6,6' caffeylferulylsophoroside) 5 glucoside; peonidin 3 (6,6' caffeylphydroxybenzo ylsophoroside) 5 glucoside; peonidin 3 (6,6' dicaffeylsophoroside) 5 glucoside; serine; unclassified drug; zileuton, Article; binding affinity; conformational transition; controlled study; hydrogen bond; molecular docking; molecular dynamics; plant leaf; priority journal; sweet potato
Depositing User: Mr Ahmad Suhairi UTP
Date Deposited: 10 Nov 2023 03:27
Last Modified: 10 Nov 2023 03:27
URI: https://khub.utp.edu.my/scholars/id/eprint/12537

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