Kernel density weighted loess normalization improves the performance of detection within asymmetrical data

by Chu Tzu-Ming, Hsieh Wen-Ping, Lin Yu-Min, Wolfinger Russell D
Published 2011-06-01

Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine

by Chu Tzu-Ming, Wolfinger Russell D, Ang Choo-Yaw, Guan Xin, Bao Wenjun, Perkins Edward J, Meyer Sharon A, Inouye Laura S
Published 2006-12-01

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

by Lee Janice S, Hester Susan, Fostel Jennifer, Corton J Christopher, Cooper Matthew, Chou Jeff W, Bushel Pierre R, Bass Michael B, Wolfinger Russell D, Boedigheimer Michael J, Liu Fenglong, Liu Jie, Qian Hui-Rong, Quackenbush John, Pettit Syril, Thompson Karol L
Published 2008-06-01

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

by Su Zhenqiang, Shippy Richard, Puri Raj K, Peterson Ron L, Mei Nan, Ma Yunqing, Luo Yuling, Li Quan-Zhen, Kawasaki Ernest S, Hong Huixiao, Herman Damir, Han Jing, Guo Xu, Fuscoe James C, Frueh Felix W, Fan Xiao-hui, Collins Patrick J, Chu Tzu-Ming, Bertholet Vincent, Cao Xiaoxi, Bao Wenjun, Barbacioru Catalin C, Amur Shashi, Qian Feng, Fang Hong, Boysen Cecilie, Croner Lisa J, Guo Lei, Goodsaid Federico M, Perkins Roger G, Harris Stephen C, Jensen Roderick V, Jones Wendell D, Shi Leming, Sun Yongming, Sun Hongmei, Thorn Brett, Turpaz Yaron, Wang Charles, Wang Sue, Warrington Janet A, Willey James C, Wu Jie, Xie Qian, Zhang Liang, Zhang Lu, Zhong Sheng, Wolfinger Russell D, Tong Weida
Published 2008-08-01

Sources of Variation in Baseline Gene Expression Levels from Toxicogenomics Study Control Animals across Multiple Laboratories

by Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Qian, Hui-Rong, Pettit, Syril, Thompson, Karol L, Liu, Jie, Quackenbush, John
Published 2010

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

by Zhang, Wenqian, Yu, Ying, Hertwig, Falk, Thierry-Mieg, Jean, Zhang, Wenwei, Thierry-Mieg, Danielle, Wang, Jian, Furlanello, Cesare, Devanarayan, Viswanath, Cheng, Jie, Deng, Youping, Hero, Barbara, Hong, Huixiao, Jia, Meiwen, Li, Li, Lin, Simon M, Nikolsky, Yuri, Oberthuer, André, Qing, Tao, Su, Zhenqiang, Volland, Ruth, Wang, Charles, Wang, May D., Ai, Junmei, Albanese, Davide, Asgharzadeh, Shahab, Avigad, Smadar, Bao, Wenjun, Bessarabova, Marina, Brilliant, Murray H., Brors, Benedikt, Chierici, Marco, Chu, Tzu-Ming, Zhang, Jibin, Grundy, Richard G., He, Min Max, Hebbring, Scott, Kaufman, Howard L., Lababidi, Samir, Lancashire, Lee J., Li, Yan, Lu, Xin X., Luo, Heng, Ma, Xiwen, Ning, Baitang, Noguera, Rosa, Peifer, Martin, Phan, John H., Roels, Frederik, Rosswog, Carolina, Shao, Susan, Shen, Jie, Theissen, Jessica, Tonini, Gian Paolo, Vandesompele, Jo, Wu, Po-Yen, Xiao, Wenzhong, Xu, Joshua, Xu, Weihong, Xuan, Jiekun, Yang, Yong, Ye, Zhan, Dong, Zirui, Zhang, Ke K., Yin, Ye, Zhao, Chen, Zheng, Yuanting, Wolfinger, Russell D., Shi, Tieliu, Malkas, Linda H., Berthold, Frank, Wang, Jun, Tong, Weida, Shi, Leming, Peng, Zhiyu, Fischer, Matthias
Published 2015