Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

by Waldron Levi, Simpson Peter, Parmigiani Giovanni, Huttenhower Curtis
Published 2012-03-01

mRNA transcript quantification in archival samples using multiplexed, color-coded probes

by Gullane Patrick, Perez-Ordonez Bayardo, Xuan Yali, Xu Wei, Goswami Rashmi S, Waldron Levi, Reis Patricia P, Irish Jonathan, Jurisica Igor, Kamel-Reid Suzanne
Published 2011-05-01

Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples

by Reis Patricia P, Xu Wei, Cervigne Nilva K, Machado Jerry, Waldron Levi, Goswami Rashmi S, Bailey Denis J, Jurisica Igor, Crump Michael R, Kamel-Reid Suzanne
Published 2010-06-01

SARS-CoV-2 Testing Service Preferences of Adults in the United States: Discrete Choice Experiment

by Zimba, Rebecca, Kulkarni, Sarah, Berry, Amanda, You, William, Mirzayi, Chloe, Westmoreland, Drew, Parcesepe, Angela, Waldron, Levi, Rane, Madhura, Kochhar, Shivani, Robertson, McKaylee, Maroko, Andrew, Grov, Christian, Nash, Denis
Published 2020-12-01

A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence

by Brown Dale, Goldstein David, Simpson Colleen, Makitie Antti A, Warner Giles C, Cervigne Nilva K, Xuan Yali, Galloni Natalie, Pintilie Melania, Perez-Ordonez Bayardo, Waldron Levi, Reis Patricia P, Gilbert Ralph, Gullane Patrick, Irish Jonathan, Jurisica Igor, Kamel-Reid Suzanne
Published 2011-10-01

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

by Waldron, Levi D., Simpson, Peter, Parmigiani, Giovanni, Huttenhower, Curtis
Published 2013

Microbial Community Function and Biomarker Discovery in the Human Microbiome

by Abubucker, Sahar, Goll, Johannes, Schubert, Alyxandria M, Cantarel, Brandi L, Rodriguez-Mueller, Beltran, Thiagarajan, Mathangi, Henrissat, Bernard, White, Owen, Kelley, Scott T, Methé, Barbara, Schloss, Patrick D, Gevers, Dirk, Mitreva, Makedonka, Izard, Jacques Georges, Waldron, Levi D., Zucker, Jeremy Daniel Hofeld, Garrett, Wendy S., Huttenhower, Curtis, Segata, Nicola
Published 2013

Metagenomic microbial community profiling using unique clade-specific marker genes

by Segata, Nicola, Waldron, Levi D., Ballarini, Annalisa, Narasimhan, Vagheesh, Jousson, Olivier, Huttenhower, Curtis
Published 2013

Metagenomic biomarker discovery and explanation

by Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S., Huttenhower, Curtis
Published 2016

Bayesian nonparametric cross-study validation of prediction methods

by Trippa, Lorenzo, Waldron, Levi, Huttenhower, Curtis, Parmigiani, Giovanni
Published 2019

Metagenomic biomarker discovery and explanation

by Segata, Nicola, Izard, Jacques, Waldron, Levi, Gevers, Dirk, Miropolsky, Larisa, Garrett, Wendy S., Huttenhower, Curtis
Published 2012

Transparency and Reproducibility in Artificial Intelligence

by Haibe-Kains, Benjamin, Adam, George Alexandru, Hosny, Ahmed, Khodakarami, Farnoosh, Waldron, Levi, Wang, Bo, McIntosh, Chris, Goldenberg, Anna, Kundaje, Anshul, Greene, Casey S., Broderick, Tamara, Hoffman, Michael M., Leek, Jeffrey T., Korthauer, Keegan, Huber, Wolfgang, Brazma, Alvis, Pineau, Joelle, Tibshirani, Robert, Hastie, Trevor, Ioannidis, John P. A., Quackenbush, John, Aerts, Hugo
Published 2022

Accessible, curated metagenomic data through ExperimentHub

by Pasolli, Edoardo, Schiffer, Lucas, Manghi, Paolo, Renson, Audrey, Obenchain, Valerie, Truong, Duy Tin, Beghini, Francesco, Malik, Faizan, Ramos, Marcel, Dowd, Jennifer B, Huttenhower, Curtis, Morgan, Martin, Segata, Nicola, Waldron, Levi
Published 2022

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

by Nelms, Bradlee D., Waldron, Levi, Barrera, Luis A., Weflen, Andrew W., Goettel, Jeremy A., Guo, Guoji, Montgomery, Robert K., Neutra, Marian R., Breault, David T., Snapper, Scott B., Orkin, Stuart H., Bulyk, Martha L., Huttenhower, Curtis, Lencer, Wayne I.
Published 2016

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

by Koren, Omry, Knights, Daniel, Gonzalez, Antonio, Waldron, Levi D., Segata, Nicola, Knight, Rob, Huttenhower, Curtis, Ley, Ruth E.
Published 2013

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome

by Ganzfried, Benjamin Frederick, Riester, Markus, Haibe-Kains, Benjamin, Risch, Thomas, Tyekucheva, Svitlana, Jazic, Ina, Wang, Xin Victoria, Ahmadifar, Mahnaz, Birrer, Michael James, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi D.
Published 2013

Short-term effectiveness of HIV care coordination among persons with recent HIV diagnosis or history of poor HIV outcomes

by Nash, Denis, Robertson, McKaylee M., Penrose, Kate, Chamberlin, Stephanie, Robbins, Rebekkah S., Braunstein, Sarah L., Myers, Julie E., Abraham, Bisrat, Kulkarni, Sarah Gorrell, Waldron, Levi, Levin, Bruce, Irvine, Mary K.
Published 2018

A reproducible approach to high-throughput biological data acquisition and integration

by Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A., Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C., Garrett, Wendy S., Huttenhower, Curtis
Published 2015

Comparing Platforms for Messenger RNA Expression Profiling of Archival Formalin-Fixed, Paraffin-Embedded Tissues

by Tyekucheva, Svitlana, Martin, Neil E., Stack, Edward C., Wei, Wei, Vathipadiekal, Vinod, Waldron, Levi, Fiorentino, Michelangelo, Lis, Rosina T., Stampfer, Meir, Loda, Massimo, Parmigiani, Giovanni, Mucci, Lorelei A., Birrer, Michael
Published 2018

Cross-study validation for the assessment of prediction algorithms

by Bernau, Christoph, Riester, Markus, Boulesteix, Anne-Laure, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi, Trippa, Lorenzo
Published 2014