Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data

by Fujiyama Asao, Toyoda Atsushi, Popendorf Kris, Hachiya Tsuyoshi, Osana Yasunori, Nishito Yukari, Itaya Mitsuhiro, Sakakibara Yasubumi
Published 2010-04-01

Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, <it>Thellungiella halophila</it>

by Kobayashi Masatomo, Tanaka Shigeo, Sakata Yoichi, Kawasaki Yoshikazu, Katori Taku, Komatsu Kenji, Taji Teruaki, Toyoda Atsushi, Seki Motoaki, Shinozaki Kazuo
Published 2010-11-01

Characterization of expressed sequence tags from a full-length enriched cDNA library of <it>Cryptomeria japonica </it>male strobili

by Sakaki Yoshiyuki, Seki Motoaki, Nanjo Tokihiko, Igasaki Tomohiro, Toyoda Atsushi, Totoki Yasushi, Futamura Norihiro, Mari Adriano, Shinozaki Kazuo, Shinohara Kenji
Published 2008-08-01

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response

by Sakaki Yoshiyuki, Tohme Joe, Ishiwata Atsushi, Toyoda Atsushi, Salcedo Andrés, Seki Motoaki, Rodríguez-Zapata Fausto, Plata Germán, Sakurai Tetsuya, Shinozaki Kazuo, Ishitani Manabu
Published 2007-12-01

Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns

by Hayashizaki Yoshihide, Kawai Jun, Kai Chikatoshi, Sakaki Yoshiyuki, Toyoda Atsushi, Totoki Yasushi, Enju Akiko, Mochida Keiichi, Kawaura Kanako, Seki Motoaki, Shinozaki Kazuo, Ogihara Yasunari
Published 2009-06-01

Functional annotation of 19,841 <it>Populus nigra </it>full-length enriched cDNA clones

by Seki Motoaki, Futamura Norihiro, Igasaki Tomohiro, Kado Tomoyuki, Nishiguchi Mitsuru, Toyoda Atsushi, Totoki Yasushi, Sakurai Tetsuya, Nanjo Tokihiko, Sakaki Yoshiyuki, Shinozaki Kazuo, Shinohara Kenji
Published 2007-12-01

The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family

by Fujiyama Asao, Sakaki Yoshiyuki, Hattori Masahira, Toyoda Atsushi, Kuroki Yoko, Tanaka Kunika, Kageyama Rui, Araragi Naozumi, Watanabe Kazunori, Goto Hiroki, Fukumaki Yasuyuki, Shibata Hiroki
Published 2009-09-01

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, <it>Thellungiella halophila</it>

by Seki Motoaki, Sakaki Yoshiyuki, Toyoda Atsushi, Totoki Yasushi, Kurotani Atsushi, Ishiwata Atsushi, Mochida Keiichi, Sakurai Tetsuya, Taji Teruaki, Ono Hirokazu, Sakata Yoichi, Tanaka Shigeo, Shinozaki Kazuo
Published 2008-11-01

Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations.

by Gakuhari, Takashi, Nakagome, Shigeki, Rasmussen, Simon, Allentoft, Morten E, Sato, Takehiro, Korneliussen, Thorfinn, Chuinneagáin, Blánaid Ní, Matsumae, Hiromi, Koganebuchi, Kae, Schmidt, Ryan, Mizushima, Souichiro, Kondo, Osamu, Shigehara, Nobuo, Yoneda, Minoru, Kimura, Ryosuke, Ishida, Hajime, Masuyama, Tadayuki, Yamada, Yasuhiro, Tajima, Atsushi, Shibata, Hiroki, Toyoda, Atsushi, Tsurumoto, Toshiyuki, Wakebe, Tetsuaki, Shitara, Hiromi, Hanihara, Tsunehiko, Willerslev, Eske, Sikora, Martin, Oota, Hiroki
Published 2020

The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity

by Hanschen, Erik R., Marriage, Tara N., Ferris, Patrick J., Hamaji, Takashi, Toyoda, Atsushi, Fujiyama, Asao, Neme, Rafik, Noguchi, Hideki, Minakuchi, Yohei, Suzuki, Masahiro, Kawai-Toyooka, Hiroko, Smith, David R., Sparks, Halle, Anderson, Jaden, Bakarić, Robert, Luria, Victor, Karger, Amir, Kirschner, Marc W., Durand, Pierre M., Michod, Richard E., Nozaki, Hisayoshi, Olson, Bradley J. S. C.
Published 2016

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

by Rensing, Stefan A., Lang, Daniel, Zimmer, Andreas D., Terry, Astrid, Salamov, Asaf, Shapiro, Harris, Nishiyama, Tomaoki, Perroud, Pierre-Francois, Lindquist, Erika A., Kamisugi, Yasuko, Tanahashi, Takako, Sakakibara, Keiko, Fujita, Tomomichi, Oishi, Kazuko, Shin, Tadasu, Kuroki, Yoko, Toyoda, Atsushi, Suzuki, Yutaka, Hashimoto, Shin-ichi, Yamaguchi, Kazuo, Sugano, Sumio, Kohara, Yuji, Fujiyama, Asao, Anterola, Aldwin, Aoki, Setsuyuki, Ashton, Neil, Barbazuk, W. Brad, Barker, Elizabeth, Bennetzen, Jeffrey L., Blankenship, Robert, Cho, Sung Hyun, Dutcher, Susan K., Estelle, Mark, Fawcett, Jeffrey A., Gundlach, Heidrum, Hanada, Kousuke, Melkozernov, Alexander, Murata, Takashi, Nelson, David R., Pils, Birgit, Prigge, Michael, Reiss, Bernd, Renner, Tanya, Rombauts, Stephane, Rushton, Paul J., Sanderfoot, Anton, Schween, Gabriele, Shiu, Shin-Han, Stueber, Kurt, Theodoulou, Frederica L., Tu, Hank, Peer, Yves Van de, Verrier, Paul J., Waters, Elizabeth, Wood, Andrew, Yang, Lixing, Cove, David, Cuming, Andrew C., Hasebe, Mitsayasu, Lucas, Susan, Mishler, Brent D., Reski, Ralf, Grigoriev, Igor V., Quatrano, Rakph S., Boore, Jeffrey L.
Published 2007

The Transgenic RNAi Project at Harvard Medical School: Resources and Validation

by Perkins, Lizabeth, Holderbaum, Laura, Tao, Rong, Hu, Yanhui, Sopko, Richelle, McCall, Kim, Yang-Zhou, Donghui, Flockhart, Ian, Binari, Richard, Shim, Hye-Seok, Miller, Audrey, Housden, Amy, Foos, Marianna, Randkelv, Sakara, Kelley, Colleen, Namgyal, Pema, Villalta, Christians, Liu, Lu-Ping, Jiang, Xia, Huan-Huan, Qiao, Wang, Xia, Fujiyama, Asao, Toyoda, Atsushi, Ayers, Kathleen, Blum, Allison, Czech, Benjamin, Neumuller, Ralph, Yan, Dong, Cavallaro, Amanda, Hibbard, Karen, Hall, Don, Cooley, Lynn, Hannon, Gregory, Lehmann, Ruth, Parks, Annette, Mohr, Stephanie, Ueda, Ryu, Kondo, Shu, Ni, Jian-Quan, Perrimon, Norbert
Published 2019

Genome Features of “Dark-Fly”, a Drosophila Line Reared Long-Term in a Dark Environment

by Izutsu, Minako, Zhou, Jun, Sugiyama, Yuzo, Nishimura, Osamu, Aizu, Tomoyuki, Toyoda, Atsushi, Fujiyama, Asao, Agata, Kiyokazu, Fuse, Naoyuki
Published 2013

Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels

by Shenton, Matt, Kobayashi, Masaaki, Terashima, Shin, Ohyanagi, Hajime, Copetti, Dario; id_orcid0000-0002-2680-2568, Hernandez-Hernandez, Tania, Zhang, Jianwei, Ohmido, Nobuko, Fujita, Masahiro, Toyoda, Atsushi, Ikawa, Hiroshi, Fujiyama, Asao, Furuumi, Hiroyasu, Miyabayashi, Toshie, Kubo, Takahiko, Kudrna, David, Wing, Rod, Yano, Kentaro, Nonomura, Ken-Ichi, Sato, Yutaka, Kurata, Nori
Published 2020

Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations

by Gakuhari, Takashi, Nakagome, Shigeki, Rasmussen, Simon, Allentoft, Morten E., Sato, Takehiro, Korneliussen, Thorfinn, Chuinneagáin, Blánaid Ní, Matsumae, Hiromi, Koganebuchi, Kae, Schmidt, Ryan, Mizushima, Souichiro, Kondo, Osamu, Shigehara, Nobuo, Yoneda, Minoru, Kimura, Ryosuke, Ishida, Hajime, Masuyama, Tadayuki, Yamada, Yasuhiro, Tajima, Atsushi, Shibata, Hiroki, Toyoda, Atsushi, Tsurumoto, Toshiyuki, Wakebe, Tetsuaki, Shitara, Hiromi, Hanihara, Tsunehiko, Willerslev, Eske, Sikora, Martin, Oota, Hiroki
Published 2021

Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations

by Gakuhari, Takashi, Nakagome, Shigeki, Rasmussen, Simon, Allentoft, Morten E., Sato, Takehiro, Korneliussen, Thorfinn, Chuinneagáin, Blánaid Ní, Matsumae, Hiromi, Koganebuchi, Kae, Schmidt, Ryan, Mizushima, Souichiro, Kondo, Osamu, Shigehara, Nobuo, Yoneda, Minoru, Kimura, Ryosuke, Ishida, Hajime, Masuyama, Tadayuki, Yamada, Yasuhiro, Tajima, Atsushi, Shibata, Hiroki, Toyoda, Atsushi, Tsurumoto, Toshiyuki, Wakebe, Tetsuaki, Shitara, Hiromi, Hanihara, Tsunehiko, Willerslev, Eske, Sikora, Martin, Oota, Hiroki
Published 2020

The prehistoric peopling of Southeast Asia.

by McColl, Hugh, Racimo, Fernando, Vinner, Lasse, Demeter, Fabrice, Gakuhari, Takashi, Moreno-Mayar, J Víctor, van Driem, George, Gram Wilken, Uffe, Seguin-Orlando, Andaine, de la Fuente Castro, Constanza, Wasef, Sally, Shoocongdej, Rasmi, Souksavatdy, Viengkeo, Sayavongkhamdy, Thongsa, Saidin, Mohd Mokhtar, Allentoft, Morten E, Sato, Takehiro, Malaspinas, Anna-Sapfo, Aghakhanian, Farhang A, Korneliussen, Thorfinn, Prohaska, Ana, Margaryan, Ashot, de Barros Damgaard, Peter, Kaewsutthi, Supannee, Lertrit, Patcharee, Nguyen, Thi Mai Huong, Hung, Hsiao-Chun, Minh Tran, Thi, Nghia Truong, Huu, Nguyen, Giang Hai, Shahidan, Shaiful, Wiradnyana, Ketut, Matsumae, Hiromi, Shigehara, Nobuo, Yoneda, Minoru, Ishida, Hajime, Masuyama, Tadayuki, Yamada, Yasuhiro, Tajima, Atsushi, Shibata, Hiroki, Toyoda, Atsushi, Hanihara, Tsunehiko, Nakagome, Shigeki, Deviese, Thibaut, Bacon, Anne-Marie, Duringer, Philippe, Ponche, Jean-Luc, Shackelford, Laura, Patole-Edoumba, Elise, Nguyen, Anh Tuan, Bellina-Pryce, Bérénice, Galipaud, Jean-Christophe, Kinaston, Rebecca, Buckley, Hallie, Pottier, Christophe, Rasmussen, Simon, Higham, Tom, Foley, Robert A, Lahr, Marta Mirazón, Orlando, Ludovic, Sikora, Martin, Phipps, Maude E, Oota, Hiroki, Higham, Charles, Lambert, David M, Willerslev, Eske
Published 2018

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

by Renfree, Marilyn B, Papenfuss, Anthony T, Deakin, Janine E, Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D, Pharo, Elizabeth A, Shaw, Geoff, Wong, Emily SW, Lefèvre, Christophe M, Nicholas, Kevin R, Kuroki, Yoko, Wakefield, Matthew J, Zenger, Kyall R, Wang, Chenwei, Ferguson-Smith, Malcolm, Nicholas, Frank W, Hickford, Danielle, Yu, Hongshi, Short, Kirsty R, Siddle, Hannah V, Frankenberg, Stephen R, Chew, Keng Yih, Menzies, Brandon R, Stringer, Jessica M, Suzuki, Shunsuke, Hore, Timothy A, Delbridge, Margaret L, Patel, Hardip R, Mohammadi, Amir, Schneider, Nanette Y, Hu, Yanqiu, O'Hara, William, Al Nadaf, Shafagh, Wu, Chen, Feng, Zhi-Ping, Cocks, Benjamin G, Wang, Jianghui, Flicek, Paul, Searle, Stephen MJ, Fairley, Susan, Beal, Kathryn, Herrero, Javier, Carone, Dawn M, Suzuki, Yutaka, Sugano, Sumio, Toyoda, Atsushi, Sakaki, Yoshiyuki, Kondo, Shinji, Nishida, Yuichiro, Tatsumoto, Shoji, Mandiou, Ion, Hsu, Arthur, McColl, Kaighin A, Lansdell, Benjamin, Weinstock, George, Kuczek, Elizabeth, McGrath, Annette, Wilson, Peter, Men, Artem, Hazar-Rethinam, Mehlika, Hall, Allison, Davis, John, Wood, David, Williams, Sarah, Sundaravadanam, Yogi, Muzny, Donna M, Jhangiani, Shalini N, Lewis, Lora R, Morgan, Margaret B, Okwuonu, Geoffrey O, Ruiz, San Juana, Santibanez, Jireh, Nazareth, Lynne, Cree, Andrew, Fowler, Gerald, Kovar, Christie L, Dinh, Huyen H, Joshi, Vandita, Jing, Chyn, Lara, Fremiet, Thornton, Rebecca, Chen, Lei, Deng, Jixin, Liu, Yue, Shen, Joshua Y, Song, Xing-Zhi, Edson, Janette, Troon, Carmen, Thomas, Daniel, Stephens, Amber, Yapa, Lankesha, Levchenko, Tanya, Gibbs, Richard A, Cooper, Desmond W, Speed, Terence P, Fujiyama, Asao, Graves, Jennifer AM, O'Neill, Rachel J, Pask, Andrew J, Forrest, Susan M, Worley, Kim C
Published 2012