Reducing bias in microbiome research: Comparing methods from sample collection to sequencing

by Jolanda Kool, Liza Tymchenko, Sudarshan A. Shetty, Sudarshan A. Shetty, Susana Fuentes
Published 2023-03-01

Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production.

by Nachiket P Marathe, Sudarshan A Shetty, Yogesh S Shouche, D G Joakim Larsson
Published 2016-01-01

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

by Siavash Atashgahi, Sudarshan A. Shetty, Hauke Smidt, Willem M. de Vos, Willem M. de Vos
Published 2018-07-01

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

by Sudarshan A. Shetty, Ben Kuipers, Siavash Atashgahi, Steven Aalvink, Hauke Smidt, Willem M. de Vos
Published 2022-04-01

Author Correction: Inter-species metabolic interactions in an in-vitro minimal human gut microbiome of core bacteria

by Sudarshan A. Shetty, Ben Kuipers, Siavash Atashgahi, Steven Aalvink, Hauke Smidt, Willem M. de Vos
Published 2022-10-01

Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population

by Sudarshan A. Shetty, Josine van Beek, Elske Bijvank, James Groot, Sjoerd Kuiling, Thijs Bosch, Debbie van Baarle, Susana Fuentes
Published 2022-02-01

An in vitro fermentation model to study the impact of bacteriophages targeting Shiga toxin-encoding Escherichia coli on the colonic microbiota

by Graça Pinto, Sudarshan A. Shetty, Erwin G. Zoetendal, Raquel F. S. Gonçalves, Ana C. Pinheiro, Carina Almeida, Joana Azeredo, Hauke Smidt
Published 2022-09-01

Exploration of microbial diversity and community structure of Lonar Lake: the only hypersaline meteorite crater lake within basalt rock

by Dhiraj ePaul, Shreyas ekumbhare, Snehit S Mhatre, Somak P Chowdhury, Sudarshan A Shetty, Nachiket P Marathe, Shrikant eBhute, Yogesh S Shouche
Published 2016-01-01

Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes

by Charlotte M. van der Graaf, Javier Sánchez-España, Iñaki Yusta, Andrey Ilin, Sudarshan A. Shetty, Nicole J. Bale, Laura Villanueva, Alfons J. M. Stams, Irene Sánchez-Andrea
Published 2020-08-01

Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits

by Sudarshan A. Shetty, Paul B. Stege, Joost Hordijk, Esther Gijsbers, Cindy M. Dierikx, Engeline van Duijkeren, Eelco Franz, Rob J. L. Willems, Fernanda L. Paganelli, Susana Fuentes
Published 2022-12-01

Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes

by Peng Peng, Yue Lu, Tom N.P. Bosma, Ivonne Nijenhuis, Bart Nijsse, Sudarshan A. Shetty, Alexander Ruecker, Alexander Umanets, Javier Ramiro-Garcia, Andreas Kappler, Detmer Sipkema, Hauke Smidt, Siavash Atashgahi
Published 2020-05-01

Frailty is related to serum inflammageing markers: results from the VITAL study

by Yannick van Sleen, Sudarshan A. Shetty, Marieke van der Heiden, Milou C. A. Venema, Nicolas Gutiérrez-Melo, Erik J. M. Toonen, Josine van Beek, Anne-Marie Buisman, Debbie van Baarle, Delphine Sauce
Published 2023-11-01

Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives With Adult Celiac Disease Patients and Controls

by Rahul Bodkhe, Sudarshan A. Shetty, Dhiraj P. Dhotre, Anil K. Verma, Khushbo Bhatia, Asha Mishra, Gurvinder Kaur, Pranav Pande, Dhinoth K. Bangarusamy, Beena P. Santosh, Rajadurai C. Perumal, Vineet Ahuja, Yogesh S. Shouche, Govind K. Makharia
Published 2019-02-01

Unveiling and harnessing the human gut microbiome in the rising burden of non-communicable diseases during urbanization

by Ziyu Huang, Yue Li, Heekuk Park, Martin Ho, Kanchan Bhardwaj, Naoki Sugimura, Hye Won Lee, Huicui Meng, Matthias P. Ebert, Kang Chao, Elke Burgermeister, Aadra P. Bhatt, Sudarshan A. Shetty, Kai Li, Weiping Wen, Tao Zuo
Published 2023-12-01

Impact of long-term dietary habits on the human gut resistome in the Dutch population

by Paul B. Stege, Joost Hordijk, Sudarshan A. Shetty, Michael Visser, Marco C. Viveen, Malbert R. C. Rogers, Esther Gijsbers, Cindy M. Dierikx, Rozemarijn Q. J. van der Plaats, Engeline van Duijkeren, Eelco Franz, Rob J. L. Willems, Susana Fuentes, Fernanda L. Paganelli
Published 2022-02-01