Will digital pathology be as disruptive as genomics?

by Steven N Hart
Published 2018-01-01

DICOM_WSI: A PYTHON IMPLEMENTATION FOR CONVERTING WHOLE-SLIDE IMAGES TO DIGITAL IMAGING AND COMMUNICATIONS IN MEDICINE COMPLIANT FILES

by Steven N. Hart
Published 2022-01-01

Succinate dehydrogenase variants in paraganglioma: why are B subunit variants ‘bad’?

by Lucinda M Gruber, Steven N Hart, Louis James Maher III
Published 2023-04-01

From days to hours: reporting clinically actionable variants from whole genome sequencing.

by Sumit Middha, Saurabh Baheti, Steven N Hart, Jean-Pierre A Kocher
Published 2014-01-01

Dicom_wsi: A python implementation for converting whole-slide images to digital imaging and Communications in Medicine compliant files

by Qiangqiang Gu, Naresh Prodduturi, Jun Jiang, Thomas J Flotte, Steven N Hart
Published 2021-01-01

Robust hierarchical density estimation and regression for re-stained histological whole slide image co-registration.

by Jun Jiang, Nicholas B Larson, Naresh Prodduturi, Thomas J Flotte, Steven N Hart
Published 2019-01-01

USING PROGRESSIVE CONTEXT ENCODERS FOR ANOMALY DETECTION IN DIGITAL PATHOLOGY IMAGES

by Ryan Gillard, Chady Meroueh, Qiangqiang Gu, Naresh Prodduturi, Sandhya Patil, Thomas Flotte, Steven N. Hart
Published 2022-01-01

SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations.

by Steven N Hart, Vivekananda Sarangi, Raymond Moore, Saurabh Baheti, Jaysheel D Bhavsar, Fergus J Couch, Jean-Pierre A Kocher
Published 2013-01-01

Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks

by Steven N Hart, William Flotte, Andrew P Norgan, Kabeer K Shah, Zachary R Buchan, Taofic Mounajjed, Thomas J Flotte
Published 2019-01-01

PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data

by Steven N. Hart, Raymond M. Moore, Michael T. Zimmermann, Gavin R. Oliver, Jan B. Egan, Alan H. Bryce, Jean-Pierre A. Kocher
Published 2015-05-01

Organizational preparedness for the use of large language models in pathology informatics

by Steven N. Hart, Noah G. Hoffman, Peter Gershkovich, Chancey Christenson, David S. McClintock, Lauren J. Miller, Ronald Jackups, Vahid Azimi, Nicholas Spies, Victor Brodsky
Published 2023-01-01

An integrative model for the comprehensive classification of BRCA1 and BRCA2 variants of uncertain clinical significance

by Edwin S. Iversen, Gary Lipton, Steven N. Hart, Kun Y. Lee, Chunling Hu, Eric C. Polley, Tina Pesaran, Amal Yussuf, Holly LaDuca, Elizabeth Chao, Rachid Karam, David E. Goldgar, Fergus J. Couch, Alvaro N. A. Monteiro
Published 2022-06-01

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4

by Jacob R. Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael T. Kalmbach, Katherine I. Kendig, Eric W. Klee, Nathan R. Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Published 2019-12-01

Recommendations for performance optimizations when using GATK3.8 and GATK4

by Jacob R Heldenbrand, Saurabh Baheti, Matthew A Bockol, Travis M Drucker, Steven N Hart, Matthew E Hudson, Ravishankar K Iyer, Michael T Kalmbach, Katherine I Kendig, Eric W Klee, Nathan R Mattson, Eric D Wieben, Mathieu Wiepert, Derek E Wildman, Liudmila S Mainzer
Published 2019-11-01

Mapping molecular subtype specific alterations in breast cancer brain metastases identifies clinically relevant vulnerabilities

by Nicola Cosgrove, Damir Varešlija, Stephen Keelan, Ashuvinee Elangovan, Jennifer M. Atkinson, Sinéad Cocchiglia, Fiona T. Bane, Vikrant Singh, Simon Furney, Chunling Hu, Jodi M. Carter, Steven N. Hart, Siddhartha Yadav, Matthew P. Goetz, Arnold D. K. Hill, Steffi Oesterreich, Adrian V. Lee, Fergus J. Couch, Leonie S. Young
Published 2022-01-01

Determining the frequency of pathogenic germline variants from exome sequencing in patients with castrate-resistant prostate cancer

by Liguo Wang, Steven N Hart, Marissa S Ellingson, Kim Schahl, Peter T Vedell, Rachel E Carlson, Jason P Sinnwell, Poulami Barman, Hugues Sicotte, Jeanette E Eckel-Passow, Krishna R Kalari, Rui Qin, Teresa M Kruisselbrink, Rafael E Jimenez, Alan H Bryce, Winston Tan, Richard Weinshilboum, Liewei Wang, Manish Kohli
Published 2016-04-01

A pathologist-annotated dataset for validating artificial intelligence: A project description and pilot study

by Sarah N Dudgeon, Si Wen, Matthew G Hanna, Rajarsi Gupta, Mohamed Amgad, Manasi Sheth, Hetal Marble, Richard Huang, Markus D Herrmann, Clifford H Szu, Darick Tong, Bruce Werness, Evan Szu, Denis Larsimont, Anant Madabhushi, Evangelos Hytopoulos, Weijie Chen, Rajendra Singh, Steven N Hart, Ashish Sharma, Joel Saltz, Roberto Salgado, Brandon D Gallas
Published 2021-01-01

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

by Katherine I. Kendig, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Jacob R. Heldenbrand, Mikel Hernaez, Matthew E. Hudson, Matthew E. Hudson, Michael T. Kalmbach, Eric W. Klee, Nathan R. Mattson, Christian A. Ross, Morgan Taschuk, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Derek E. Wildman, Liudmila S. Mainzer, Liudmila S. Mainzer
Published 2019-08-01

Design considerations for workflow management systems use in production genomics research and the clinic

by Azza E. Ahmed, Joshua M. Allen, Tajesvi Bhat, Prakruthi Burra, Christina E. Fliege, Steven N. Hart, Jacob R. Heldenbrand, Matthew E. Hudson, Dave Deandre Istanto, Michael T. Kalmbach, Gregory D. Kapraun, Katherine I. Kendig, Matthew Charles Kendzior, Eric W. Klee, Nate Mattson, Christian A. Ross, Sami M. Sharif, Ramshankar Venkatakrishnan, Faisal M. Fadlelmola, Liudmila S. Mainzer
Published 2021-11-01

Mutational Landscapes of Sequential Prostate Metastases and Matched Patient Derived Xenografts during Enzalutamide Therapy.

by Manish Kohli, Liguo Wang, Fang Xie, Hugues Sicotte, Ping Yin, Scott M Dehm, Steven N Hart, Peter T Vedell, Poulami Barman, Rui Qin, Douglas W Mahoney, Rachel E Carlson, Jeanette E Eckel-Passow, Thomas D Atwell, Patrick W Eiken, Brendan P McMenomy, Eric D Wieben, Gautam Jha, Rafael E Jimenez, Richard Weinshilboum, Liewei Wang
Published 2015-01-01