Global-Scale Metabolomic Profiling of Human Hair for Simultaneous Monitoring of Endogenous Metabolome, Short- and Long-Term Exposome

by Ying Chen, Jian Guo, Shipei Xing, Huaxu Yu, Tao Huan
Published 2021-05-01

SIMILE enables alignment of tandem mass spectra with statistical significance

by Daniel G. C. Treen, Mingxun Wang, Shipei Xing, Katherine B. Louie, Tao Huan, Pieter C. Dorrestein, Trent R. Northen, Benjamin P. Bowen
Published 2022-05-01

JPA: Joint Metabolic Feature Extraction Increases the Depth of Chemical Coverage for LC-MS-Based Metabolomics and Exposomics

by Jian Guo, Sam Shen, Min Liu, Chenjingyi Wang, Brian Low, Ying Chen, Yaxi Hu, Shipei Xing, Huaxu Yu, Yu Gao, Mingliang Fang, Tao Huan
Published 2022-02-01

Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression

by Ting Fu, Tao Huan, Gibraan Rahman, Hui Zhi, Zhenjiang Xu, Tae Gyu Oh, Jian Guo, Sally Coulter, Anupriya Tripathi, Cameron Martino, Justin L. McCarville, Qiyun Zhu, Fritz Cayabyab, Brian Low, Mingxiao He, Shipei Xing, Fernando Vargas, Ruth T. Yu, Annette Atkins, Christopher Liddle, Janelle Ayres, Manuela Raffatellu, Pieter C. Dorrestein, Michael Downes, Rob Knight, Ronald M. Evans
Published 2023-08-01

Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

by Wout Bittremieux, Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender P. Gomes, Christine M. Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M. Gauglitz, William H. Gerwick, Tao Huan, Alan K. Jarmusch, Rima F. Kaddurah-Daouk, Kyo Bin Kang, Hyun Woo Kim, Todor Kondić, Helena Mannochio-Russo, Michael J. Meehan, Alexey V. Melnik, Louis-Felix Nothias, Claire O’Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L. Schymanski, Justin J. J. van der Hooft, Kelly C. Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C. Dorrestein
Published 2023-12-01