Bioinformatics and the Metaverse: Are We Ready?

by Stephen Taylor, Shamit Soneji, Shamit Soneji
Published 2022-05-01

CellexalVR: A virtual reality platform to visualize and analyze single-cell omics data

by Oscar Legetth, Johan Rodhe, Stefan Lang, Parashar Dhapola, Mattias Wallergård, Shamit Soneji
Published 2021-11-01

Human and Murine Hematopoietic Stem Cell Aging Is Associated with Functional Impairments and Intrinsic Megakaryocytic/Erythroid Bias.

by Alexandra Rundberg Nilsson, Shamit Soneji, Sofia Adolfsson, David Bryder, Cornelis Jan Pronk
Published 2016-01-01

Development of acoustically isolated extracellular plasma vesicles for biomarker discovery in allogeneic hematopoietic stem cell transplantation

by Hooi Ching Lim, Shamit Soneji, Róbert Pálmason, Stig Lenhoff, Thomas Laurell, Stefan Scheding
Published 2021-01-01

Mitotic History Reveals Distinct Stem Cell Populations and Their Contributions to Hematopoiesis

by Petter Säwén, Stefan Lang, Pankaj Mandal, Derrick J. Rossi, Shamit Soneji, David Bryder
Published 2016-03-01

Hif-1α Deletion May Lead to Adverse Treatment Effect in a Mouse Model of MLL-AF9-Driven AML

by Talia Velasco-Hernandez, Shamit Soneji, Isabel Hidalgo, Eva Erlandsson, Jörg Cammenga, David Bryder
Published 2019-01-01

Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data

by Parashar Dhapola, Johan Rodhe, Rasmus Olofzon, Thomas Bonald, Eva Erlandsson, Shamit Soneji, Göran Karlsson
Published 2022-08-01

CD244 expression represents functional decline of murine hematopoietic stem cells after in vitro culture

by Shuhei Koide, Valgardur Sigurdsson, Visnja Radulovic, Kiyoka Saito, Zhiqian Zheng, Stefan Lang, Shamit Soneji, Atsushi Iwama, Kenichi Miharada
Published 2022-01-01

B-lineage acute lymphoblastic leukemia causes cellautonomous defects in long-term hematopoietic stem cell function

by Christina T. Jensen, Josefine Åhsberg, Johanna Tingvall-Gustafsson, Rajesh Somasundaram, Stefan Lang, Jonas Ungerbäck, Anna Porwit, Shamit Soneji, Mikael Sigvardsson
Published 2023-03-01

Hematopoietic Stem Cells Are Intrinsically Protected against MLL-ENL-Mediated Transformation

by Amol Ugale, Gudmundur L. Norddahl, Martin Wahlestedt, Petter Säwén, Pekka Jaako, Cornelis Jan Pronk, Shamit Soneji, Jörg Cammenga, David Bryder
Published 2014-11-01

Single-Cell Analysis Identifies Distinct Stages of Human Endothelial-to-Hematopoietic Transition

by Carolina Guibentif, Roger Emanuel Rönn, Charlotta Böiers, Stefan Lang, Shobhit Saxena, Shamit Soneji, Tariq Enver, Göran Karlsson, Niels-Bjarne Woods
Published 2017-04-01

Genome-wide RNAi Screen Identifies Cohesin Genes as Modifiers of Renewal and Differentiation in Human HSCs

by Roman Galeev, Aurélie Baudet, Praveen Kumar, Alexandra Rundberg Nilsson, Björn Nilsson, Shamit Soneji, Therese Törngren, Åke Borg, Anders Kvist, Jonas Larsson
Published 2016-03-01

MafA Expression Preserves Immune Homeostasis in Human and Mouse Islets

by Tania Singh, Luis Sarmiento, Cheng Luan, Rashmi B. Prasad, Jenny Johansson, Luis R. Cataldo, Erik Renström, Shamit Soneji, Corrado Cilio, Isabella Artner
Published 2018-12-01

Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis

by Cristina Pina, José Teles, Cristina Fugazza, Gillian May, Dapeng Wang, Yanping Guo, Shamit Soneji, John Brown, Patrik Edén, Mattias Ohlsson, Carsten Peterson, Tariq Enver
Published 2015-06-01

PAX5 is part of a functional transcription factor network targeted in lymphoid leukemia.

by Kazuki Okuyama, Tobias Strid, Jacob Kuruvilla, Rajesh Somasundaram, Susana Cristobal, Emma Smith, Mahadesh Prasad, Thoas Fioretos, Henrik Lilljebjörn, Shamit Soneji, Stefan Lang, Jonas Ungerbäck, Mikael Sigvardsson
Published 2019-08-01

Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging

by Petter Säwen, Mohamed Eldeeb, Eva Erlandsson, Trine A Kristiansen, Cecilia Laterza, Zaal Kokaia, Göran Karlsson, Joan Yuan, Shamit Soneji, Pankaj K Mandal, Derrick J Rossi, David Bryder
Published 2018-12-01

Culture adaptation alters transcriptional hierarchies among single human embryonic stem cells reflecting altered patterns of differentiation.

by Paul J Gokhale, Janice K Au-Young, SriVidya Dadi, David N Keys, Neil J Harrison, Mark Jones, Shamit Soneji, Tariq Enver, Jon K Sherlock, Peter W Andrews
Published 2015-01-01

Hepatic Leukemia Factor Maintains Quiescence of Hematopoietic Stem Cells and Protects the Stem Cell Pool during Regeneration

by Karolina Komorowska, Alexander Doyle, Martin Wahlestedt, Agatheeswaran Subramaniam, Shubhranshu Debnath, Jun Chen, Shamit Soneji, Ben Van Handel, Hanna K.A. Mikkola, Kenichi Miharada, David Bryder, Jonas Larsson, Mattias Magnusson
Published 2017-12-01

The Tetraspanin CD9 Affords High-Purity Capture of All Murine Hematopoietic Stem Cells

by Göran Karlsson, Emma Rörby, Cristina Pina, Shamit Soneji, Kristian Reckzeh, Kenichi Miharada, Christine Karlsson, Yanping Guo, Cristina Fugazza, Rajeev Gupta, Joost H.A. Martens, Hendrik G. Stunnenberg, Stefan Karlsson, Tariq Enver
Published 2013-08-01

Defining the Minimal Factors Required for Erythropoiesis through Direct Lineage Conversion

by Sandra Capellera-Garcia, Julian Pulecio, Kishori Dhulipala, Kavitha Siva, Violeta Rayon-Estrada, Sofie Singbrant, Mikael N.E. Sommarin, Carl R. Walkley, Shamit Soneji, Göran Karlsson, Ángel Raya, Vijay G. Sankaran, Johan Flygare
Published 2016-06-01