diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data

by Paolo Marangio, Ka Ying Toby Law, Guido Sanguinetti, Sander Granneman
Published 2021-05-01

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1

by Cornelia Kilchert, Sina Wittmann, Monica Passoni, Sneha Shah, Sander Granneman, Lidia Vasiljeva
Published 2015-12-01

Temporal-iCLIP captures co-transcriptional RNA-protein interactions

by Ross A. Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Published 2023-02-01

Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation.

by Sunny Sharma, Jun Yang, Rob van Nues, Peter Watzinger, Peter Kötter, Denis L J Lafontaine, Sander Granneman, Karl-Dieter Entian
Published 2017-05-01

Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress

by Rob van Nues, Gabriele Schweikert, Erica de Leau, Alina Selega, Andrew Langford, Ryan Franklin, Ira Iosub, Peter Wadsworth, Guido Sanguinetti, Sander Granneman
Published 2017-04-01

The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.

by Richa Sardana, Xin Liu, Sander Granneman, Jieyi Zhu, Michael Gill, Ophelia Papoulas, Edward M Marcotte, David Tollervey, Carl C Correll, Arlen W Johnson
Published 2015-02-01

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

by Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski
Published 2017-11-01

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation

by Ira Alexandra Iosub, Robert Willem van Nues, Stuart William McKellar, Karen Jule Nieken, Marta Marchioretto, Brandon Sy, Jai Justin Tree, Gabriella Viero, Sander Granneman
Published 2020-05-01

Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough.

by Rebecca K Holmes, Alex C Tuck, Chenchen Zhu, Hywel R Dunn-Davies, Grzegorz Kudla, Sandra Clauder-Munster, Sander Granneman, Lars M Steinmetz, Christine Guthrie, David Tollervey
Published 2015-12-01

Purification of cross-linked RNA-protein complexes by phenol-toluol extraction

by Erika C. Urdaneta, Carlos H. Vieira-Vieira, Timon Hick, Hans-Herrmann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach, Benedikt M. Beckmann
Published 2019-03-01

The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins

by Liang-Cui Chu, Pedro Arede, Wei Li, Erika C. Urdaneta, Ivayla Ivanova, Stuart W. McKellar, Jimi C. Wills, Theresa Fröhlich, Alexander von Kriegsheim, Benedikt M. Beckmann, Sander Granneman
Published 2022-05-01

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

by Elena Burlacu, Fredrik Lackmann, Lisbeth-Carolina Aguilar, Sergey Belikov, Rob van Nues, Christian Trahan, Ralph D. Hector, Nicholas Dominelli-Whiteley, Scott L. Cockroft, Lars Wieslander, Marlene Oeffinger, Sander Granneman
Published 2017-09-01

Puf6 primes 60S pre-ribosome nuclear export at low temperature

by Stefan Gerhardy, Michaela Oborská-Oplová, Ludovic Gillet, Richard Börner, Rob van Nues, Alexander Leitner, Erich Michel, Janusz J. Petkowski, Sander Granneman, Roland K. O. Sigel, Ruedi Aebersold, Vikram Govind Panse
Published 2021-08-01

Radical genome remodelling accompanied the emergence of a novel host-restricted bacterial pathogen.

by Gonzalo Yebra, Andreas F Haag, Maan M Neamah, Bryan A Wee, Emily J Richardson, Pilar Horcajo, Sander Granneman, María Ángeles Tormo-Más, Ricardo de la Fuente, J Ross Fitzgerald, José R Penadés
Published 2021-05-01

Publisher Correction: RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance

by Daniel G. Mediati, Julia L. Wong, Wei Gao, Stuart McKellar, Chi Nam Ignatius Pang, Sylvania Wu, Winton Wu, Brandon Sy, Ian R. Monk, Joanna M. Biazik, Marc R. Wilkins, Benjamin P. Howden, Timothy P. Stinear, Sander Granneman, Jai J. Tree
Published 2022-09-01

RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance

by Daniel G. Mediati, Julia L. Wong, Wei Gao, Stuart McKellar, Chi Nam Ignatius Pang, Sylvania Wu, Winton Wu, Brandon Sy, Ian R. Monk, Joanna M. Biazik, Marc R. Wilkins, Benjamin P. Howden, Timothy P. Stinear, Sander Granneman, Jai J. Tree
Published 2022-06-01

RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression

by Stuart W. McKellar, Ivayla Ivanova, Pedro Arede, Rachel L. Zapf, Noémie Mercier, Liang-Cui Chu, Daniel G. Mediati, Amy C. Pickering, Paul Briaud, Robert G. Foster, Grzegorz Kudla, J. Ross Fitzgerald, Isabelle Caldelari, Ronan K. Carroll, Jai J. Tree, Sander Granneman
Published 2022-06-01