High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology

by Ségolène Caboche, Christophe Audebert, David Hot
Published 2014-04-01

CuReSim-LoRM: A Tool to Simulate Metabarcoding Long Reads

by Yasmina Mesloub, Delphine Beury, Félix Vandermeeren, Ségolène Caboche
Published 2023-09-01

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data

by Ségolène Caboche, Gaël Even, Alexandre Loywick, Christophe Audebert, David Hot
Published 2017-12-01

The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical “Microscope” Affect the Biological Interpretation?

by Léa Siegwald, Ségolène Caboche, Gaël Even, Eric Viscogliosi, Christophe Audebert, Magali Chabé
Published 2019-09-01

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.

by Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche
Published 2017-01-01

Exposure to atmospheric Ag, TiO2, Ti and SiO2 engineered nanoparticles modulates gut inflammatory response and microbiota in mice

by Eva Guilloteau, Madjid Djouina, Ségolène Caboche, Christophe Waxin, Karine Deboudt, Delphine Beury, David Hot, Muriel Pichavant, Laurent Dubuquoy, David Launay, Cécile Vignal, Marie Choël, Mathilde Body-Malapel
Published 2022-05-01

Erratum: Rémy et al. Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues. <i>Nutrients</i> 2020, <i>12</i>,...

by Gaëlle Rémy, Emilie Dubois-Deruy, Jeanne Alard, Gwenola Kervoaze, Maggy Chwastyniak, Morgane Baron, Delphine Beury, Léa Siegwald, Ségolène Caboche, David Hot, Philippe Gosset, Corinne Grangette, Florence Pinet, Isabelle Wolowczuk, Muriel Pichavant
Published 2021-09-01

Modelling the Impact of Chronic Cigarette Smoke Exposure in Obese Mice: Metabolic, Pulmonary, Intestinal, and Cardiac Issues

by Emilie Dubois-Deruy, Gaëlle Rémy, Jeanne Alard, Gwenola Kervoaze, Maggy Chwastyniak, Morgane Baron, Delphine Beury, Léa Siegwald, Ségolène Caboche, David Hot, Philippe Gosset, Corinne Grangette, Florence Pinet, Isabelle Wolowczuk, Muriel Pichavant
Published 2020-03-01

Murine in utero exposure to simulated complex urban air pollution disturbs offspring gut maturation and microbiota during intestinal suckling-to-weaning transition in a sex-depende...

by Eva Guilloteau, Patrice Coll, Zhuyi Lu, Madjid Djouina, Mathieu Cazaunau, Christophe Waxin, Antonin Bergé, Ségolène Caboche, Aline Gratien, Elie Al Marj, David Hot, Laurent Dubuquoy, David Launay, Cécile Vignal, Sophie Lanone, Mathilde Body-Malapel
Published 2022-06-01