Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions

by Daiguo Deng, Zengrong Lei, Xiaobin Hong, Ruochi Zhang, Fengfeng Zhou
Published 2022-01-01

EnRank: An Ensemble Method to Detect Pulmonary Hypertension Biomarkers Based on Feature Selection and Machine Learning Models

by Xiangju Liu, Yu Zhang, Chunli Fu, Ruochi Zhang, Fengfeng Zhou
Published 2021-04-01

pyHIVE, a health-related image visualization and engineering system using Python

by Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou
Published 2018-11-01

AB-Gen: Antibody Library Design with Generative Pre-trained Transformer and Deep Reinforcement Learning

by Xiaopeng Xu, Tiantian Xu, Juexiao Zhou, Xingyu Liao, Ruochi Zhang, Yu Wang, Lu Zhang, Xin Gao
Published 2023-10-01

Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning [version 2; peer review: 2 approved, 3 approved with re...

by Xiaopeng Xu, Juexiao Zhou, Xin Gao, Yu Wang, Xingyu Liao, Zhongxiao Li, Ruochi Zhang, Chen Zhu, Qing Zhan
Published 2024-02-01

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

by Haoyang Li, Juexiao Zhou, Zhongxiao Li, Siyuan Chen, Xingyu Liao, Bin Zhang, Ruochi Zhang, Yu Wang, Shiwei Sun, Xin Gao
Published 2023-03-01

A polygenic stacking classifier revealed the complicated platelet transcriptomic landscape of adult immune thrombocytopenia

by Chengfeng Xu, Ruochi Zhang, Meiyu Duan, Yongming Zhou, Jizhang Bao, Hao Lu, Jie Wang, Minghui Hu, Zhaoyang Hu, Fengfeng Zhou, Wenwei Zhu
Published 2022-06-01

Severity Detection for the Coronavirus Disease 2019 (COVID-19) Patients Using a Machine Learning Model Based on the Blood and Urine Tests

by Haochen Yao, Nan Zhang, Ruochi Zhang, Meiyu Duan, Tianqi Xie, Jiahui Pan, Ejun Peng, Juanjuan Huang, Yingli Zhang, Xiaoming Xu, Hong Xu, Fengfeng Zhou, Guoqing Wang
Published 2020-07-01

Predicting the antigenic evolution of SARS-COV-2 with deep learning

by Wenkai Han, Ningning Chen, Xinzhou Xu, Adil Sahil, Juexiao Zhou, Zhongxiao Li, Huawen Zhong, Elva Gao, Ruochi Zhang, Yu Wang, Shiwei Sun, Peter Pak-Hang Cheung, Xin Gao
Published 2023-06-01

SPIN reveals genome-wide landscape of nuclear compartmentalization

by Yuchuan Wang, Yang Zhang, Ruochi Zhang, Tom van Schaik, Liguo Zhang, Takayo Sasaki, Daniel Peric-Hupkes, Yu Chen, David M. Gilbert, Bas van Steensel, Andrew S. Belmont, Jian Ma
Published 2021-01-01