GEMINI: integrative exploration of genetic variation and genome annotations.

by Umadevi Paila, Brad A Chapman, Rory Kirchner, Aaron R Quinlan
Published 2013-01-01

Screening Method for CRISPR/Cas9 Inhibition of a Human DNA Virus: Herpes Simplex Virus

by Werner Neuhausser, Hyung Oh, Pierce Eggan, Magdalena Angelova, Rory Kirchner, Kevin Eggan, David Knipe
Published 2020-09-01

Sequencing of Captive Target Transcripts Identifies the Network of Regulated Genes and Functions of Primate-Specific miR-522

by Shen Mynn Tan, Rory Kirchner, Jingmin Jin, Oliver Hofmann, Larry McReynolds, Winston Hide, Judy Lieberman
Published 2014-08-01

Herpesviral lytic gene functions render the viral genome susceptible to novel editing by CRISPR/Cas9

by Hyung Suk Oh, Werner M Neuhausser, Pierce Eggan, Magdalena Angelova, Rory Kirchner, Kevin C Eggan, David M Knipe
Published 2019-12-01

A Diencephalic Dopamine Source Provides Input to the Superior Colliculus, where D1 and D2 Receptors Segregate to Distinct Functional Zones

by Andrew D. Bolton, Yasunobu Murata, Rory Kirchner, Sung-Yon Kim, Andrew Young, Tru Dang, Yuchio Yanagawa, Martha Constantine-Paton
Published 2015-11-01

Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells

by Wenyang Li, Jennifer Y Chen, Cheng Sun, Robert P Sparks, Lorena Pantano, Raza-Ur Rahman, Sean P Moran, Joshua V Pondick, Rory Kirchner, David Wrobel, Michael Bieler, Achim Sauer, Shannan J Ho Sui, Julia F Doerner, Jörg F Rippmann, Alan C Mullen
Published 2022-05-01

edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test

by Dimont, Emmanuel, Shi, Jiantao, Kirchner, Rory, Hide, Winston
Published 2015

Sequencing of Captive Target Transcripts Identifies the Network of Regulated Genes and Functions of Primate-Specific miR-522

by Tan, Shen Mynn, Kirchner, Rory D, Jin, Jingmin, Hofmann, Oliver Marc, McReynolds, Larry, Hide, Winston, Lieberman, Judy
Published 2016

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations

by Paila, Umadevi, Chapman, Brad A., Kirchner, Rory, Quinlan, Aaron R.
Published 2014

ALS-Implicated Protein TDP-43 Sustains Levels of STMN2, a Mediator of Motor Neuron Growth and Repair

by Limone, Francesco, Guerra San Juan, Irune, Burberry, Aaron, Kirchner, Rory, Chen, Kuchuan, Eggan, Kevin, Klim, Joseph, Williams, Luis, Davis-Dusenbery, Brandi N, Mordes, Daniel, Steinbaugh, Michael, Gamage, Kanchana, Moccia, Rob, Cassel, Seth, Wainger, Brian, Woolf, Clifford
Published 2020

Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement

by Kalish, Brian T., Cheadle, Lucas, Hrvatin, Sinisa, Nagy, M. Aurel, Rivera, Samuel, Crow, Megan, Gillis, Jesse, Kirchner, Rory, Greenberg, Michael E.
Published 2018

Automated, highly scalable RNA-seq analysis

by Kirchner, Rory
Published 2016

An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates

by O'Day, Elizabeth, Le, Minh, Imai, Shunsuke, Tan, Shen Mynn, Kirchner, Rory, Arthanari, Haribabu, Hofmann, Oliver, Wagner, Gerhard, Lieberman, Judy
Published 2019

A Diencephalic Dopamine Source Provides Input to the Superior Colliculus, where D1 and D2 Receptors Segregate to Distinct Functional Zones

by Bolton, Andrew D., Murata, Yasunobu, Kirchner, Rory, Kim, Sung-Yon, Young, Andrew, Dang, Tru, Yanagawa, Yuchio, Constantine-Paton, Martha, Bolton, Andrew D.
Published 2016