Stochiometric quantification of the thiol redox proteome of macrophages reveals subcellular compartmentalization and susceptibility to oxidative perturbations

by Jicheng Duan, Tong Zhang, Matthew J. Gaffrey, Karl K. Weitz, Ronald J. Moore, Xiaolu Li, Ming Xian, Brian D. Thrall, Wei-Jun Qian
Published 2020-09-01

Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

by Michelle Liberton, William B Chrisler, Carrie D Nicora, Ronald J Moore, Richard D Smith, David W Koppenaal, Himadri B Pakrasi, Jon M Jacobs
Published 2017-01-01

Dengue virus infection perturbs lipid homeostasis in infected mosquito cells.

by Rushika Perera, Catherine Riley, Giorgis Isaac, Amber S Hopf-Jannasch, Ronald J Moore, Karl W Weitz, Ljiljana Pasa-Tolic, Thomas O Metz, Jiri Adamec, Richard J Kuhn
Published 2012-01-01

High and low doses of ionizing radiation induce different secretome profiles in a human skin model.

by Qibin Zhang, Melissa Matzke, Athena A Schepmoes, Ronald J Moore, Bobbie-Jo Webb-Robertson, Zeping Hu, Matthew E Monroe, Wei-Jun Qian, Richard D Smith, William F Morgan
Published 2014-01-01

Blood peptidome-degradome profile of breast cancer.

by Yufeng Shen, Nikola Tolić, Tao Liu, Rui Zhao, Brianne O Petritis, Marina A Gritsenko, David G Camp, Ronald J Moore, Samuel O Purvine, Francisco J Esteva, Richard D Smith
Published 2010-10-01

Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress

by Xiaolu Li, Nicholas J. Day, Song Feng, Matthew J. Gaffrey, Tai-Du Lin, Vanessa L. Paurus, Matthew E. Monroe, Ronald J. Moore, Bin Yang, Ming Xian, Wei-Jun Qian
Published 2021-10-01

Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells

by Ying Zhu, Paul D. Piehowski, Rui Zhao, Jing Chen, Yufeng Shen, Ronald J. Moore, Anil K. Shukla, Vladislav A. Petyuk, Martha Campbell-Thompson, Clayton E. Mathews, Richard D. Smith, Wei-Jun Qian, Ryan T. Kelly
Published 2018-02-01

Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution

by Paul D. Piehowski, Ying Zhu, Lisa M. Bramer, Kelly G. Stratton, Rui Zhao, Daniel J. Orton, Ronald J. Moore, Jia Yuan, Hugh D. Mitchell, Yuqian Gao, Bobbie-Jo M. Webb-Robertson, Sudhansu K. Dey, Ryan T. Kelly, Kristin E. Burnum-Johnson
Published 2020-01-01

Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-C...

by Frank O Aylward, Lily Khadempour, Daniel M Tremmel, Bradon R McDonald, Carrie D Nicora, Si Wu, Ronald J Moore, Daniel J Orton, Matthew E Monroe, Paul D Piehowski, Samuel O Purvine, Richard D Smith, Mary S Lipton, Kristin E Burnum-Johnson, Cameron R Currie
Published 2015-01-01

Author Correction: High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

by Jongmin Woo, Sarah M. Williams, Lye Meng Markillie, Song Feng, Chia-Feng Tsai, Victor Aguilera-Vazquez, Ryan L. Sontag, Ronald J. Moore, Dehong Hu, Hardeep S. Mehta, Joshua Cantlon-Bruce, Tao Liu, Joshua N. Adkins, Richard D. Smith, Geremy C. Clair, Ljiljana Pasa-Tolic, Ying Zhu
Published 2021-11-01

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

by Jongmin Woo, Sarah M. Williams, Lye Meng Markillie, Song Feng, Chai-Feng Tsai, Victor Aguilera-Vazquez, Ryan L. Sontag, Ronald J. Moore, Dehong Hu, Hardeep S. Mehta, Joshua Cantlon-Bruce, Tao Liu, Joshua N. Adkins, Richard D. Smith, Geremy C. Clair, Ljiljana Pasa-Tolic, Ying Zhu
Published 2021-10-01

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.

by Frank O Aylward, Lily Khadempour, Daniel M Tremmel, Bradon R McDonald, Carrie D Nicora, Si Wu, Ronald J Moore, Daniel J Orton, Matthew E Monroe, Paul D Piehowski, Samuel O Purvine, Richard D Smith, Mary S Lipton, Kristin E Burnum-Johnson, Cameron R Currie
Published 2015-01-01

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics

by Chia-Feng Tsai, Yi-Ting Wang, Chuan-Chih Hsu, Reta Birhanu Kitata, Rosalie K. Chu, Marija Velickovic, Rui Zhao, Sarah M. Williams, William B. Chrisler, Marda L. Jorgensen, Ronald J. Moore, Ying Zhu, Karin D. Rodland, Richard D. Smith, Clive H. Wasserfall, Tujin Shi, Tao Liu
Published 2023-01-01

New Insights Into Lignification via Network and Multi-Omics Analyses of Arogenate Dehydratase Knock-Out Mutants in Arabidopsis thaliana

by Kim K. Hixson, Kim K. Hixson, Joaquim V. Marques, Jason P. Wendler, Jason E. McDermott, Karl K. Weitz, Therese R. Clauss, Matthew E. Monroe, Ronald J. Moore, Joseph Brown, Mary S. Lipton, Mary S. Lipton, Callum J. Bell, Ljiljana Paša-Tolić, Laurence B. Davin, Norman G. Lewis
Published 2021-05-01

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

by Chengdong Xu, Sneha P. Couvillion, Ryan L. Sontag, Nancy G. Isern, Yukari Maezato, Stephen R. Lindemann, Taniya Roy Chowdhury, Rui Zhao, Beau R. Morton, Rosalie K. Chu, Ronald J. Moore, Janet K. Jansson, Vanessa L. Bailey, Paula J. Mouser, Margaret F. Romine, James F. Fredrickson, Thomas O. Metz
Published 2021-06-01

Integrative analysis of the mitochondrial proteome in yeast.

by Holger Prokisch, Curt Scharfe, David G Camp, Wenzhong Xiao, Lior David, Christophe Andreoli, Matthew E Monroe, Ronald J Moore, Marina A Gritsenko, Christian Kozany, Kim K Hixson, Heather M Mottaz, Hans Zischka, Marius Ueffing, Zelek S Herman, Ronald W Davis, Thomas Meitinger, Peter J Oefner, Richard D Smith, Lars M Steinmetz
Published 2004-06-01

Machine learning-assisted elucidation of CD81–CD44 interactions in promoting cancer stemness and extracellular vesicle integrity

by Erika K Ramos, Chia-Feng Tsai, Yuzhi Jia, Yue Cao, Megan Manu, Rokana Taftaf, Andrew D Hoffmann, Lamiaa El-Shennawy, Marina A Gritsenko, Valery Adorno-Cruz, Emma J Schuster, David Scholten, Dhwani Patel, Xia Liu, Priyam Patel, Brian Wray, Youbin Zhang, Shanshan Zhang, Ronald J Moore, Jeremy V Mathews, Matthew J Schipma, Tao Liu, Valerie L Tokars, Massimo Cristofanilli, Tujin Shi, Yang Shen, Nurmaa K Dashzeveg, Huiping Liu
Published 2022-10-01

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics

by Chia-Feng Tsai, Pengfei Zhang, David Scholten, Kendall Martin, Yi-Ting Wang, Rui Zhao, William B. Chrisler, Dhwani B. Patel, Maowei Dou, Yuzhi Jia, Carolina Reduzzi, Xia Liu, Ronald J. Moore, Kristin E. Burnum-Johnson, Miao-Hsia Lin, Chuan-Chih Hsu, Jon M. Jacobs, Jacob Kagan, Sudhir Srivastava, Karin D. Rodland, H. Steven Wiley, Wei-Jun Qian, Richard D. Smith, Ying Zhu, Massimo Cristofanilli, Tao Liu, Huiping Liu, Tujin Shi
Published 2021-03-01

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

by Jason E. McDermott, Osama A. Arshad, Vladislav A. Petyuk, Yi Fu, Marina A. Gritsenko, Therese R. Clauss, Ronald J. Moore, Athena A. Schepmoes, Rui Zhao, Matthew E. Monroe, Michael Schnaubelt, Chia-Feng Tsai, Samuel H. Payne, Chen Huang, Liang-Bo Wang, Steven Foltz, Matthew Wyczalkowski, Yige Wu, Ehwang Song, Molly A. Brewer, Mathangi Thiagarajan, Christopher R. Kinsinger, Ana I. Robles, Emily S. Boja, Henry Rodriguez, Daniel W. Chan, Bing Zhang, Zhen Zhang, Li Ding, Richard D. Smith, Tao Liu, Karin D. Rodland
Published 2020-04-01

Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection

by Praveen-Kumar Raj-Kumar, Xiaoying Lin, Tao Liu, Lori A. Sturtz, Marina A. Gritsenko, Vladislav A. Petyuk, Tyler J. Sagendorf, Brenda Deyarmin, Jianfang Liu, Anupama Praveen-Kumar, Guisong Wang, Jason E. McDermott, Anil K. Shukla, Ronald J. Moore, Matthew E. Monroe, Bobbie-Jo M. Webb-Robertson, Jeffrey A. Hooke, Leigh Fantacone-Campbell, Brad Mostoller, Leonid Kvecher, Jennifer Kane, Jennifer Melley, Stella Somiari, Patrick Soon-Shiong, Richard D. Smith, Richard J. Mural, Karin D. Rodland, Craig D. Shriver, Albert J. Kovatich, Hai Hu
Published 2024-05-01