Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon

by Roman Jaksik, David A. Wheeler, Marek Kimmel
Published 2023-02-01

Multiomics-Based Feature Extraction and Selection for the Prediction of Lung Cancer Survival

by Roman Jaksik, Kamila Szumała, Khanh Ngoc Dinh, Jarosław Śmieja
Published 2024-03-01

Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays

by Roman Jaksik, Michal Marczyk, Joanna Polanska, Joanna Rzeszowska-Wolny
Published 2013-12-01

Circuits Regulating Superoxide and Nitric Oxide Production and Neutralization in Different Cell Types: Expression of Participating Genes and Changes Induced by Ionizing Radiation

by Patryk Bil, Sylwia Ciesielska, Roman Jaksik, Joanna Rzeszowska-Wolny
Published 2020-08-01

Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. <i>Viruses</i> 2022, <i...

by Monika Klara Kurpas, Roman Jaksik, Pawel Kuś, Marek Kimmel
Published 2023-04-01

Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution

by Monika Klara Kurpas, Roman Jaksik, Pawel Kuś, Marek Kimmel
Published 2022-10-01

Predicting time to relapse in acute myeloid leukemia through stochastic modeling of minimal residual disease based on clonality data

by Khanh N. Dinh, Roman Jaksik, Seth J. Corey, Marek Kimmel
Published 2021-09-01

Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood sampl...

by Patrycja Daca-Roszak, Roman Jaksik, Julia Paczkowska, Michał Witt, Ewa Ziętkiewicz
Published 2020-10-01

CRISPRi for specific inhibition of miRNA clusters and miRNAs with high sequence homology

by Monika Drobna-Śledzińska, Natalia Maćkowska-Maślak, Roman Jaksik, Paulina Dąbek, Michał Witt, Małgorzata Dawidowska
Published 2022-04-01

A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes

by Marzena Mura, Roman Jaksik, Anna Lalik, Krzysztof Biernacki, Marek Kimmel, Joanna Rzeszowska-Wolny, Krzysztof Fujarewicz
Published 2019-02-01

Identification of Endogenous Control miRNAs for RT-qPCR in T-Cell Acute Lymphoblastic Leukemia

by Monika Drobna, Bronisława Szarzyńska-Zawadzka, Patrycja Daca-Roszak, Maria Kosmalska, Roman Jaksik, Michał Witt, Małgorzata Dawidowska
Published 2018-09-01

In vitro differentiation of ciliated cells in ALI-cultured human airway epithelium – The framework for functional studies on airway differentiation in ciliopathies

by Zuzanna Bukowy-Bieryłło, Patrycja Daca-Roszak, Joanna Jurczak, Hanna Przystałowska-Macioła, Roman Jaksik, Michał Witt, Ewa Ziętkiewicz
Published 2022-01-01

hsa-miR-20b-5p and hsa-miR-363-3p Affect Expression of <i>PTEN</i> and <i>BIM</i> Tumor Suppressor Genes and Modulate Survival of T-ALL Cells In Vitro

by Monika Drobna, Bronisława Szarzyńska, Roman Jaksik, Łukasz Sędek, Anna Kuchmiy, Tom Taghon, Pieter Van Vlierberghe, Tomasz Szczepański, Michał Witt, Małgorzata Dawidowska
Published 2020-05-01

P340: IN SEARCH FOR GENOMIC AND TRANSCRIPTOMIC PREDICTORS OF RELAPSE IN PEDIATRIC T-ALL

by Małgorzata Dawidowska, Roman Jaksik, Monika Drobna-Sledzinska, Natalia Maćkowska-Maślak, Maria Kosmalska, Łukasz Sędek, Monika Lejman, Agata Pastorczak, Tomasz Szczepański, Michał Witt
Published 2023-08-01

Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells

by Natalia Vydra, Patryk Janus, Paweł Kus, Tomasz Stokowy, Katarzyna Mrowiec, Agnieszka Toma-Jonik, Aleksandra Krzywon, Alexander Jorge Cortez, Bartosz Wojtas, Bartłomiej Gielniewski, Roman Jaksik, Marek Kimmel, Wieslawa Widlak
Published 2021-11-01

Comprehensive Investigation of miRNome Identifies Novel Candidate miRNA-mRNA Interactions Implicated in T-Cell Acute Lymphoblastic Leukemia

by Małgorzata Dawidowska, Roman Jaksik, Monika Drobna, Bronisława Szarzyńska-Zawadzka, Maria Kosmalska, Łukasz Sędek, Ludomiła Machowska, Anna Lalik, Monika Lejman, Marek Ussowicz, Krzysztof Kałwak, Jerzy R. Kowalczyk, Tomasz Szczepański, Michał Witt
Published 2019-03-01

Small RNA-Seq Reveals Similar miRNA Transcriptome in Children and Young Adults with T-ALL and Indicates miR-143-3p as Novel Candidate Tumor Suppressor in This Leukemia

by Małgorzata Dawidowska, Natalia Maćkowska-Maślak, Monika Drobna-Śledzińska, Maria Kosmalska, Roman Jaksik, Donata Szymczak, Małgorzata Jarmuż-Szymczak, Alicja Sadowska-Klasa, Marzena Wojtaszewska, Łukasz Sędek, Tomasz Wróbel, Jan Maciej Zaucha, Tomasz Szczepański, Krzysztof Lewandowski, Sebastian Giebel, Michał Witt
Published 2022-09-01

Hematopoietic stem and progenitor cells confer cross-protective trained immunity in mouse models

by Bailee N. Kain, Brandon T. Tran, Pamela N. Luna, Ruoqiong Cao, Duy T. Le, Marcus A. Florez, Laure Maneix, Jack D. Toups, Daniel E. Morales-Mantilla, Scott Koh, Hyojeong Han, Roman Jaksik, Yun Huang, Andre Catic, Chad A. Shaw, Katherine Y. King
Published 2023-09-01

The origin of bladder cancer from mucosal field effects

by Jolanta Bondaruk, Roman Jaksik, Ziqiao Wang, David Cogdell, Sangkyou Lee, Yujie Chen, Khanh Ngoc Dinh, Tadeusz Majewski, Li Zhang, Shaolong Cao, Feng Tian, Hui Yao, Paweł Kuś, Huiqin Chen, John N. Weinstein, Neema Navai, Colin Dinney, Jianjun Gao, Dan Theodorescu, Christopher Logothetis, Charles C. Guo, Wenyi Wang, David McConkey, Peng Wei, Marek Kimmel, Bogdan Czerniak
Published 2022-07-01

The origin of bladder cancer from mucosal field effects

by Jolanta Bondaruk, Roman Jaksik, Ziqiao Wang, David Cogdell, Sangkyou Lee, Yujie Chen, Khanh Ngoc Dinh, Tadeusz Majewski, Li Zhang, Shaolong Cao, Feng Tian, Hui Yao, Paweł Kuś, Huiqin Chen, John N. Weinstein, Neema Navai, Colin Dinney, Jianjun Gao, Dan Theodorescu, Christopher Logothetis, Charles C. Guo, Wenyi Wang, David McConkey, Peng Wei, Marek Kimmel, Bogdan Czerniak
Published 2022-07-01