Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

by Matthew R. Olm, Patrick T. West, Brandon Brooks, Brian A. Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Published 2019-02-01

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

by Brandon Brooks, Matthew R. Olm, Brian A. Firek, Robyn Baker, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Published 2017-11-01

Mucosa-associated bacterial diversity in necrotizing enterocolitis.

by Rachel Brower-Sinning, Diana Zhong, Misty Good, Brian Firek, Robyn Baker, Chhinder P Sodhi, David J Hackam, Michael J Morowitz
Published 2014-01-01

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.

by Yonatan Sher, Matthew R Olm, Tali Raveh-Sadka, Christopher T Brown, Ruth Sher, Brian Firek, Robyn Baker, Michael J Morowitz, Jillian F Banfield
Published 2020-01-01

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

by Yue Clare Lou, Matthew R. Olm, Spencer Diamond, Alexander Crits-Christoph, Brian A. Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Published 2021-09-01

Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit.

by Dusan Licina, Seema Bhangar, Brandon Brooks, Robyn Baker, Brian Firek, Xiaochen Tang, Xiaochen Tang, Michael J Morowitz, Jillian F Banfield, William W Nazaroff
Published 2016-01-01

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles

by Christopher T. Brown, Weili Xiong, Matthew R. Olm, Brian C. Thomas, Robyn Baker, Brian Firek, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Published 2018-05-01

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development

by Tali Raveh-Sadka, Brian C Thomas, Andrea Singh, Brian Firek, Brandon Brooks, Cindy J Castelle, Itai Sharon, Robyn Baker, Misty Good, Michael J Morowitz, Jillian F Banfield
Published 2015-03-01

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

by Patrick T. West, Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Haley Gause, Yue Clare Lou, Brian A. Firek, Robyn Baker, Alexander D. Johnson, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Published 2021-06-01

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

by Brandon Brooks, Matthew R. Olm, Brian A. Firek, Robyn Baker, David Geller-McGrath, Sophia R. Reimer, Karina R. Soenjoyo, Jennifer S. Yip, Dylan Dahan, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Published 2018-06-01