Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips

by Carvalho Benilton S, Liu Ruijie, Ritchie Matthew E, Irizarry Rafael A
Published 2011-03-01

Illumina WG-6 BeadChip strips should be normalized separately

by Gerondakis Steve, Ritchie Matthew E, Banerjee Ashish, Shi Wei, Smyth Gordon K
Published 2009-11-01

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay

by Dermitzakis Emmanouil T, Daelemans Caroline, Dimas Antigone S, Forrest Matthew S, Ritchie Matthew E, Deloukas Panagiotis, Tavaré Simon
Published 2010-05-01

Spike-in validation of an Illumina-specific variance-stabilizing transformation

by Tavaré Simon, Barbosa-Morais Nuno L, Ritchie Matthew E, Dunning Mark J, Lynch Andy G
Published 2008-06-01

Statistical issues in the analysis of Illumina data

by Tavaré Simon, Lynch Andy G, Barbosa-Morais Nuno L, Dunning Mark J, Ritchie Matthew E
Published 2008-02-01

Empirical array quality weights in the analysis of microarray data

by Holloway Andrew, Dobrovic Alexander, van Laar Ryan, Neilson Jody, Diyagama Dileepa, Ritchie Matthew E, Smyth Gordon K
Published 2006-05-01

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta

by Clark Taane G, Campino Susana, Forrest Matthew S, Sudbery Ian M, Abu-Amero Sayeda, Smits Guillaume, Ritchie Matthew E, Daelemans Caroline, Stanier Philip, Kwiatkowski Dominic, Deloukas Panos, Dermitzakis Emmanouil T, Tavaré Simon, Moore Gudrun E, Dunham Ian
Published 2010-04-01

Integrative analysis of RUNX1 downstream pathways and target genes

by Liu Marjorie, Cannon Ping, Schütz Frédéric, Ritchie Matthew E, Carmichael Catherine, Beissbarth Tim, Buchet-Poyau Karine, Escher Robert, Simpson Ken M, Michaud Joëlle, Shen Xiaofeng, Ito Yoshiaki, Raskind Wendy H, Horwitz Marshall S, Osato Motomi, Turner David R, Speed Terence P, Kavallaris Maria, Smyth Gordon K, Scott Hamish S
Published 2008-07-01

Gene network disruptions and neurogenesis defects in the adult Ts1Cje mouse model of Down syndrome

by Hewitt, Chelsee Ann, Ling, King Hwa, Merson, Tobias D., Simpson, Ken M., Ritchie, Matthew E., King, Sarah L., Pritchard, Melanie A., Smyth, Gordon K., Thomas, Tim, Scott, Hamish S., Voss, Anne K.
Published 2010

limma powers differential expression analyses for RNA-sequencing and microarray studies

by Ritchie, Matthew E., Phipson, Belinda, Wu, Di, Hu, Yifang, Law, Charity W., Shi, Wei, Smyth, Gordon K.
Published 2015

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.

by Barbosa-Morais, Nuno L, Dunning, Mark J, Samarajiwa, Shamith A, Darot, Jeremy FJ, Ritchie, Matthew E, Lynch, Andy G, Tavaré, Simon
Published 2020

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.

by Ritchie, Matthew E, Liu, Ruijie, Carvalho, Benilton S, Australia and New Zealand Multiple Sclerosis Genetics Consortium (ANZgene), Irizarry, Rafael A
Published 2011

High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

by Granovskaia, Marina V, Jensen, Lars J, Ritchie, Matthew E, Toedling, Joern, Ning, Ye, Bork, Peer, Huber, Wolfgang, Steinmetz, Lars M
Published 2011

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.

by Ritchie, Matthew E, Forrest, Matthew S, Dimas, Antigone S, Daelemans, Caroline, Dermitzakis, Emmanouil T, Deloukas, Panagiotis, Tavaré, Simon
Published 2011

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

by Daelemans, Caroline, Ritchie, Matthew E, Smits, Guillaume, Abu-Amero, Sayeda, Sudbery, Ian M, Forrest, Matthew S, Campino, Susana, Clark, Taane G, Stanier, Philip, Kwiatkowski, Dominic, Deloukas, Panos, Dermitzakis, Emmanouil T, Tavaré, Simon, Moore, Gudrun E, Dunham, Ian
Published 2011